[BioC] Fixes to limma treat() function

Gordon K Smyth smyth at wehi.EDU.AU
Mon Jun 15 03:41:30 CEST 2009


I've committed a major bug fix to the treat() function of the limma 
package.  Users of this function should re-install limma 2.18.2 or 2.19.2 
from Bioconductor.

I've introduced a new function topTreat().  Here's an example calling 
sequence:

   fit <- lmFit(y, design)
   fit <- treat(fit, lfc=0.1)
   topTreat(fit, coef=2)

Best wishes
Gordon



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