[BioC] Does factDesign deal with two-color data?

[Robert Gentleman]

Hi Dejian,
  Yes, it really just requires that you have an ExpressionSet, but please let us
know (on list) if any issues arise.

  best wishes
    Robert


Dejian Zhao wrote:
> Hi,
> I learned about factDesign package from a scientific  article which 
> deals with affy data. 
> The command library(help=factDesign) invokes some information about this 
> package.
> It shows that this package "Suggests:      affy".
> Therefore I wonder whether the factDesign package can deal with 
> two-color data.
> Thanks
> 
> Dejian
> 
> 
> Package:       factDesign
> Title:         Factorial designed microarray experiment analysis
> Version:       1.20.0
> Author:        Denise Scholtens
> Description:   This package provides a set of tools for analyzing data 
> from a factorial designed microarray experiment,
>                or any microarray experiment for which a linear model is 
> appropriate. The functions can be used to
>                evaluate tests of contrast of biological interest and 
> perform single outlier detection.
> Imports:       genefilter, stats
> _*Suggests:      affy*_
> 
> 	[[alternative HTML version deleted]]
> 
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-- 
Robert Gentleman, PhD
Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M1-B514
PO Box 19024
Seattle, Washington 98109-1024
206-667-7700
rgentlem at fhcrc.org