[BioC] error message about makeTranscript funciton in package GenomeGraphs

[shirley zhang]

Dear List,

When I tried to run examples in  the user guide of package
"GenomeGraphs", I got the following error message
after coping the code on page 3.  The code on page 2
"gdPlot(gene)"works fine.

> transcript <- makeTranscript(id = "ENSG00000095203", type = "ensembl_gene_id", biomart = mart)
Error in getBM(c("structure_gene_stable_id",
"structure_transcript_stable_id",  :
 Invalid attribute(s): structure_gene_stable_id,
structure_transcript_stable_id
Please use the function 'listAttributes' to get valid attribute names

Can anybody kindly tell me what I am missing? Thanks.

> sessionInfo()
R version 2.9.0 (2009-04-17)
x86_64-unknown-linux-gnu

locale:
LC_CTYPE=en_US.iso885915;LC_NUMERIC=C;LC_TIME=en_US.iso885915;LC_COLLATE=en_US.iso885915;LC_MONETARY=C;LC_MESSAGES=en_US.iso885915;LC_PAPER=en_US.iso885915;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.iso885915;LC_IDENTIFICATION=C

attached base packages:
[1] grid      stats     graphics  grDevices utils     datasets  methods
[8] base

other attached packages:
[1] GenomeGraphs_1.2.3 biomaRt_2.0.0

loaded via a namespace (and not attached):
[1] RCurl_0.94-1 XML_2.3-0


-- 
Xiaoling