May 2013 Archives by thread

• Messages sorted by: [ subject ] [ author ] [ date ]
• More info on this list...

Starting: Wed May 1 00:49:51 CEST 2013
Ending: Fri May 31 21:34:47 CEST 2013
Messages: 622

• [BioC] GO term as "keytype" in GO.db   Robert Castelo
• [BioC] BSgenomeForge seed file - seqnames field   Kelly V [guest]
  • [BioC] BSgenomeForge seed file - seqnames field   Hervé Pagès
    • [BioC] BSgenomeForge seed file - seqnames field   Vining, Kelly
      • [BioC] BSgenomeForge seed file - seqnames field   Hervé Pagès
• [BioC] edgeR asimmetry in miRNA experiment   Gordon K Smyth
• [BioC] edgeR: Using ratios (translational efficiencies) as input   Gordon K Smyth
  • [BioC] edgeR: Using ratios (translational efficiencies) as input   Alvaro J. González
    • [BioC] edgeR: Using ratios (translational efficiencies) as input   gowtham
• [BioC] Deleting object rows while looping - II   Hervé Pagès
  • [BioC] Deleting object rows while looping - II   Hervé Pagès
  • [BioC] Deleting object rows while looping - II   Steve Lianoglou
    • [BioC] Deleting object rows while looping - II   Hervé Pagès
• [BioC] MakeTranscriptDbFromGFF   Ugo Borello
  • [BioC] MakeTranscriptDbFromGFF   Marc Carlson
    • [BioC] MakeTranscriptDbFromGFF   Ugo Borello
      • [BioC] MakeTranscriptDbFromGFF   Marc Carlson
      • [BioC] MakeTranscriptDbFromGFF   Ugo Borello
      • [BioC] MakeTranscriptDbFromGFF   Marc Carlson
      • [BioC] MakeTranscriptDbFromGFF   Ugo Borello
      • [BioC] MakeTranscriptDbFromGFF   Ugo Borello
      • [BioC] MakeTranscriptDbFromGFF   Marc Carlson
      • [BioC] MakeTranscriptDbFromGFF   Marc Carlson
      • [BioC] MakeTranscriptDbFromGFF   Ugo Borello
• [BioC] biomaRt not returning expected results   Richard Birnie [guest]
  • [BioC] biomaRt not returning expected results   Steffen Durinck
• [BioC] beadarray package   Mark Dunning
• [BioC] ABarray error   Mani, Jay
  • [BioC] ABarray error   Mani, Jay
• [BioC] Analyzing technical replicates with DESeq2   Michael Muratet
  • [BioC] Analyzing technical replicates with DESeq2   Ryan Thompson
    • [BioC] Analyzing technical replicates with DESeq2   Wolfgang Huber
    • [BioC] Analyzing technical replicates with DESeq2   Simon Anders
• [BioC] Gviz: UcscTrack function error   Michael Morley [guest]
  • [BioC] Gviz: UcscTrack function error   Hahne, Florian
    • [BioC] Gviz: UcscTrack function error   Michael Lawrence
• [BioC] Course: Intermediate R / Bioconductor for High-Throughput Sequence Analysis, 28-29 May, Seattle   Martin Morgan
• [BioC] IdeogramTrack and bigWig file errors in Gviz   Michael Lawrence
• [BioC] Limma/Affy - Include expression Intensity in Final 'decideTests' results   Gordon K Smyth
  • [BioC] Limma/Affy - Include expression Intensity in Final 'decideTests' results   Atul Kakrana
• [BioC] QuasR special case alignment   Michael Stadler
  • [BioC] QuasR special case alignment   Ugo Borello
    • [BioC] QuasR special case alignment   Michael Stadler
• [BioC] Migrating a Large BSgenome Package to R 3.0   Dario Strbenac
  • [BioC] Migrating a Large BSgenome Package to R 3.0   Charles Berry
    • [BioC] Migrating a Large BSgenome Package to R 3.0   Dario Strbenac
  • [BioC] Migrating a Large BSgenome Package to R 3.0   Hervé Pagès
• [BioC] Gviz: DataTrack heatmap   Hahne, Florian
• [BioC] Diff Bind consultation   Rory Stark
• [BioC] mogene20stcdf   Nikul Soni
  • [BioC] mogene20stcdf   James W. MacDonald
    • [BioC] mogene20stcdf   cstrato
• [BioC] Deleting object rows while looping - III   Daniel Berner
• [BioC] Job opening, KCL Breakthrough Breast Cancer Research Unit   Lawler, Katherine
• [BioC] error using frma() with brainarray CDFs   Ty Thomson
  • [BioC] error using frma() with brainarray CDFs   Matthew McCall
    • [BioC] error using frma() with brainarray CDFs   Ty Thomson
      • [BioC] error using frma() with brainarray CDFs   Matthew McCall
      • [BioC] error using frma() with brainarray CDFs   Ty Thomson
• [BioC] GenomicRanges BamFileList() not a function anymore?   Sam McInturf
  • [BioC] GenomicRanges BamFileList() not a function anymore?   Martin Morgan
  • [BioC] GenomicRanges BamFileList() not a function anymore?   James W. MacDonald
    • [BioC] GenomicRanges BamFileList() not a function anymore?   Sam McInturf
• [BioC] GO evidence codes in org.Xx.egGO   Peter Langfelder
  • [BioC] GO evidence codes in org.Xx.egGO   Marc Carlson
• [BioC] annotation - biomaRt - getBM - multiple entrez ID for one ensembl ID   Laure Cougnaud [guest]
  • [BioC] annotation - biomaRt - getBM - multiple entrez ID for one ensembl ID   James W. MacDonald
    • [BioC] annotation - biomaRt - getBM - multiple entrez ID for one ensembl ID   Laure Cougnaud
      • [BioC] annotation - biomaRt - getBM - multiple entrez ID for one ensembl ID   Steffen Durinck
• [BioC] getBM outputs logical(0)   Stefanie Tauber
  • [BioC] getBM outputs logical(0)   Steffen Durinck
    • [BioC] getBM outputs logical(0)   Stefanie Tauber
• [BioC] Analyzing "differential variability" of methylation (and gene expression)   Simone
  • [BioC] Analyzing "differential variability" of methylation (and gene expression)   Kasper Daniel Hansen
    • [BioC] Analyzing "differential variability" of methylation (and gene expression)   Simone
      • [BioC] Analyzing "differential variability" of methylation (and gene expression)   Tim Triche, Jr.
      • [BioC] Analyzing "differential variability" of methylation (and gene expression)   Simone
      • [BioC] Analyzing "differential variability" of methylation (and gene expression)   Brent Pedersen
      • [BioC] Analyzing "differential variability" of methylation (and gene expression)   Simone
• [BioC] A few questions about DESeq2 (estimation of dispersion and results table)   amandine.fournier at chu-lyon.fr
  • [BioC] A few questions about DESeq2 (estimation of dispersion and results table)   Michael Love
• [BioC] Agilent 8x60K Gene Expression Package   Vandana Sandhu
  • [BioC] Agilent 8x60K Gene Expression Package   Gordon K Smyth
• [BioC] ComBat   Johnson, William Evan
• [BioC] Question for DiffBind julian rozenberg   Rory Stark
• [BioC] DiffBind questions   Rory Stark
• [BioC] cellHTS2 and channelNames   Mark Dane
  • [BioC] cellHTS2 and channelNames   Wolfgang Huber
    • [BioC] cellHTS2 and channelNames   Wolfgang Huber
• [BioC] Design matrix and BCV   Gordon K Smyth
  • [BioC] Design matrix and BCV   Manoj Hariharan
  • [BioC] Design matrix and BCV   Manoj Hariharan
    • [BioC] edgeR: finding tissue specific genes [was: Design matrix and BCV]   Gordon K Smyth
      • [BioC] edgeR: finding tissue specific genes [was: Design matrix and BCV]   Manoj Hariharan
      • [BioC] edgeR: finding tissue specific genes [was: Design matrix and BCV]   Gordon K Smyth
      • [BioC] edgeR: finding tissue specific genes [was: Design matrix and BCV]   Manoj Hariharan
• [BioC] Tukey\'s HSD after ANOVA   Sandy [guest]
• [BioC] retrieving external Gene IDs from TranscriptDB Object   Stefanie Tauber
  • [BioC] retrieving external Gene IDs from TranscriptDB Object   Ugo Borello
    • [BioC] retrieving external Gene IDs from TranscriptDB Object   Stefanie Tauber
      • [BioC] retrieving external Gene IDs from TranscriptDB Object   Ugo Borello
• [BioC] Fwd: feature weights in 'superpc' package   Yukti Choudhury
  • [BioC] Fwd: feature weights in 'superpc' package   Tim Triche, Jr.
• [BioC] XML package - 500 internal server error   Maciej Jończyk
  • [BioC] XML package - 500 internal server error   Sean Davis
    • [BioC] XML package - 500 internal server error   Maciej Jończyk
    • [BioC] XML package - 500 internal server error   Maciej Jończyk
      • [BioC] VariantAnnotation error with readVcf in Windows 7   ying chen
      • [BioC] VariantAnnotation error with readVcf in Windows 7   Valerie Obenchain
• [BioC] Install \"xps\" package   Laura [guest]
  • [BioC] Install \"xps\" package   James W. MacDonald
    • [BioC] Install \"xps\" package   cstrato
• [BioC] flowQ qaProcess fails to run in both Windows and Mac OS: What am I doing wrong?   Jason Eriksen [guest]
  • [BioC] flowQ qaProcess fails to run in both Windows and Mac OS: What am I doing wrong?   Dan Tenenbaum
• [BioC] DEXSeq: subsetting ExonCountSet ?   Yvan Wenger
  • [BioC] DEXSeq: subsetting ExonCountSet ?   Steve Lianoglou
    • [BioC] DEXSeq: subsetting ExonCountSet ?   Alejandro Reyes
• [BioC] hyperdraw: How can I control node label font size?   hettling
  • [BioC] hyperdraw: How can I control node label font size?   Paul Murrell
    • [BioC] hyperdraw: How can I control node label font size?   hettling
• [BioC] Problem with biomaRt::getSequence.   Tanvir Ahamed [guest]
  • [BioC] Problem with biomaRt::getSequence.   Sean Davis
• [BioC] (no subject)   Abdul Rawoof
  • [BioC] (no subject)   Sam McInturf
    • [BioC] (no subject)   Sam McInturf
  • [BioC] (no subject)   Gordon K Smyth
    • [BioC] (no subject)   Ryan C. Thompson
      • [BioC] edgeR: interactions in linear models   Gordon K Smyth
      • [BioC] edgeR: interactions in linear models   Gordon K Smyth
      • [BioC] edgeR: interactions in linear models   Ryan C. Thompson
• [BioC] Plugins in ensemblVEP   Thomas Sandmann [guest]
  • [BioC] Plugins in ensemblVEP   Valerie Obenchain
  • [BioC] Plugins in ensemblVEP   Valerie Obenchain
• [BioC] No $df.residual   FRANKLIN JOHNSON [guest]
  • [BioC] No $df.residual   Sean Davis
    • [BioC] No $df.residual   Johnson, Franklin Theodore
      • [BioC] No $df.residual   Sean Davis
      • [BioC] No $df.residual   Johnson, Franklin Theodore
      • [BioC] No $df.residual   Johnson, Franklin Theodore
• [BioC] makeTranscriptDbFromGFF for Unstranded Transcripts   Dario Strbenac
  • [BioC] makeTranscriptDbFromGFF for Unstranded Transcripts   Hervé Pagès
    • [BioC] makeTranscriptDbFromGFF for Unstranded Transcripts   Dario Strbenac
      • [BioC] makeTranscriptDbFromGFF for Unstranded Transcripts   Hervé Pagès
      • [BioC] makeTranscriptDbFromGFF for Unstranded Transcripts   Dario Strbenac
• [BioC] coverage on very large ReadGappedAlignmentsObject   Stefanie Tauber
  • [BioC] coverage on very large ReadGappedAlignmentsObject   Martin Morgan
    • [BioC] coverage on very large ReadGappedAlignmentsObject   Steve Lianoglou
      • [BioC] coverage on very large ReadGappedAlignmentsObject   Stefanie Tauber
      • [BioC] coverage on very large ReadGappedAlignmentsObject   Stefanie Tauber
      • [BioC] coverage on very large ReadGappedAlignmentsObject   Kasper Daniel Hansen
      • [BioC] coverage on very large ReadGappedAlignmentsObject   Hervé Pagès
• [BioC] Fwd: Outliers in RNA seq analysis using DESeq2   Emma Quinn
  • [BioC] Fwd: Outliers in RNA seq analysis using DESeq2   Michael Love
• [BioC] serious problem with GOstats package   gregory voisin
  • [BioC] serious problem with GOstats package   Dan Tenenbaum
    • [BioC] serious problem with GOstats package   Dan Tenenbaum
      • [BioC] serious problem with GOstats package   James W. MacDonald
  • [BioC] serious problem with GOstats package   Steve Lianoglou
  • [BioC] serious problem with GOstats package   James W. MacDonald
    • [BioC] serious problem with GOstats package   James W. MacDonald
• [BioC] Bug when running Gviz::GenomeAxisTrack and highlighting region in axis   Alvaro J. Gonzalez
  • [BioC] Bug when running Gviz::GenomeAxisTrack and highlighting region in axis   Alvaro J. Gonzalez
  • [BioC] Bug when running Gviz::GenomeAxisTrack and highlighting region in axis   Hahne, Florian
  • [BioC] Bug when running Gviz::GenomeAxisTrack and highlighting region in axis   Alvaro J. Gonzalez
• [BioC] heatmap with variance stabilizing transformed expression data in DESeq   Wang, Li
  • [BioC] heatmap with variance stabilizing transformed expression data in DESeq   Steve Lianoglou
    • [BioC] heatmap with variance stabilizing transformed expression data in DESeq   Wang, Li
      • [BioC] heatmap with variance stabilizing transformed expression data in DESeq   Steve Lianoglou
      • [BioC] heatmap with variance stabilizing transformed expression data in DESeq   Michael Love
      • [BioC] heatmap with variance stabilizing transformed expression data in DESeq   Wang, Li
      • [BioC] heatmap with variance stabilizing transformed expression data in DESeq   Steve Lianoglou
      • [BioC] heatmap with variance stabilizing transformed expression data in DESeq   Simon Anders
• [BioC] Affymetrix US Rice Gene Strip 1.1   Nicholas Lawson [guest]
  • [BioC] Affymetrix US Rice Gene Strip 1.1   James W. MacDonald
    • [BioC] Affymetrix US Rice Gene Strip 1.1   cstrato
    • [BioC] Affymetrix US Rice Gene Strip 1.1   James W. MacDonald
• [BioC] Add new affy organism platform   Ekta Jain
  • [BioC] Add new affy organism platform   Marc Carlson
• [BioC] Error in example from biomaRt vignette   Steffen Durinck
• [BioC] status of visnab   Abhishek Pratap
  • [BioC] status of visnab   Tengfei Yin
• [BioC] GenomicRanges flank function with ignore.strand=TRUE   Leonard Goldstein
  • [BioC] GenomicRanges flank function with ignore.strand=TRUE   Valerie Obenchain
• [BioC] Statistics question for multi-factor interaction test in edgeR   Hilary Smith
  • [BioC] Statistics question for multi-factor interaction test in edgeR   Gordon K Smyth
    • [BioC] Statistics question for multi-factor interaction test in edgeR   Hilary Smith
  • [BioC] Statistics question for multi-factor interaction test in edgeR   Gordon K Smyth
    • [BioC] Statistics question for multi-factor interaction test in edgeR   Hilary Smith
  • [BioC] Statistics question for multi-factor interaction test in edgeR   Gordon K Smyth
    • [BioC] Simultaneous FDR control for multiple contrasts in edgeR   Gordon K Smyth
      • [BioC] Simultaneous FDR control for multiple contrasts in edgeR   Hilary Smith
      • [BioC] Simultaneous FDR control for multiple contrasts in edgeR   Tim Triche, Jr.
      • [BioC] Simultaneous FDR control for multiple contrasts in edgeR   Tim Triche, Jr.
    • [BioC] Statistics question for multi-factor interaction test in edgeR   Hilary Smith
• [BioC] where can I obtain the package of hugene20st.db   Guannan Sun
• [BioC] node stack overflow   Jingjing Jin
  • [BioC] node stack overflow   Sean Davis
• [BioC] advantages of annotation packages   Rameswara Sashi Kiran Challa
  • [BioC] advantages of annotation packages   Tim Triche, Jr.
  • [BioC] advantages of annotation packages   Steve Lianoglou
  • [BioC] advantages of annotation packages   Martin Morgan
    • [BioC] advantages of annotation packages   Marc Carlson
      • [BioC] advantages of annotation packages   Cook, Malcolm
      • [BioC] advantages of annotation packages   Martin Morgan
    • [BioC] advantages of annotation packages   Rameswara Sashi Kiran Challa
• [BioC] Enrichment score test in R   Duy Ngoc Do
• [BioC] Reactome support for more organisms   Asta Laiho
  • [BioC] Reactome support for more organisms   Marc Carlson
• [BioC] calcNormFactors in edgeR - quick question from a very inexperienced user   Jan Zaucha
  • [BioC] calcNormFactors in edgeR - quick question from a very inexperienced user   Gordon K Smyth
    • [BioC] calcNormFactors in edgeR - quick question from a very inexperienced user   Jan Zaucha
• [BioC] DESeq Normalization Question   Stephen Turner
  • [BioC] DESeq Normalization Question   Ryan C. Thompson
    • [BioC] DESeq Normalization Question   Michael Love
• [BioC] Problem with cellHTS2 convertWellCoordinates   Mark Dane
  • [BioC] Problem with cellHTS2 convertWellCoordinates   Joseph Barry
• [BioC] [combat] Re: Error in FUN(newX[, i], ...) : missing observations in cov/c   Johnson, William Evan
  • [BioC] [combat] Re: Error in FUN(newX[, i], ...) : missing observations in cov/c   Marc-Danie Jessica Nazaire
  • [BioC] [combat] Error in FUN(newX[, i], ...) : missing observations in cov/c   Johnson, William Evan
    • [BioC] [combat] Error in FUN(newX[, i], ...) : missing observations in cov/c   Marc-Danie Jessica Nazaire
• [BioC] Gviz problem with chr16   Adam Novak [guest]
  • [BioC] Gviz problem with chr16   Hahne, Florian
• [BioC] libxml2: incompatible library   Fred [guest]
  • [BioC] libxml2: incompatible library   Frederico Moraes Ferreira
    • [BioC] libxml2: incompatible library   Finak, Greg
      • [BioC] [SOLVED] Re: libxml2: incompatible library   Frederico Moraes Ferreira
• [BioC] rma of oligo feature set crashes R   Ou, Jianhong
  • [BioC] rma of oligo feature set crashes R   Benilton Carvalho
    • [BioC] rma of oligo feature set crashes R   Ou, Jianhong
      • [BioC] rma of oligo feature set crashes R   Benilton Carvalho
• [BioC] silly question about AnnotationDbi/seqnames.db   Tim Triche, Jr.
  • [BioC] silly question about AnnotationDbi/seqnames.db   Marc Carlson
• [BioC] how to convert genotype snp matrix to nucleotide genotypes?   Tereza Jezkova UNLV
  • [BioC] how to convert genotype snp matrix to nucleotide genotypes?   Vincent Carey
    • [BioC] how to convert genotype snp matrix to nucleotide genotypes?   Tereza Jezkova UNLV
      • [BioC] how to convert genotype snp matrix to nucleotide genotypes?   Vincent Carey
      • [BioC] how to convert genotype snp matrix to nucleotide genotypes?   Stephanie M. Gogarten
      • [BioC] how to convert genotype snp matrix to nucleotide genotypes?   Martin Morgan
• [BioC] Statistical Genetics Post-doc position available in Melbourne   Lavinia Gordon
• [BioC] VariantAnnotation and distance to genes   Gad Abraham
  • [BioC] VariantAnnotation and distance to genes   James W. MacDonald
    • [BioC] VariantAnnotation and distance to genes   Valerie Obenchain
    • [BioC] VariantAnnotation and distance to genes   Steve Lianoglou
      • [BioC] VariantAnnotation and distance to genes   James W. MacDonald
      • [BioC] VariantAnnotation and distance to genes   Gad Abraham
• [BioC] ComBat using SVA and bladderbatch package   minyoung lee [guest]
• [BioC] Charm Error - methp   zeynep özkeserli
• ComBat â - multi-modal prior distribution   minyoung lee [guest]
• [BioC] DESeq Variance Stabilizing Transformation   Hickman, R.J. (Richard)
  • [BioC] DESeq Variance Stabilizing Transformation   Michael Love
    • [BioC] DESeq Variance Stabilizing Transformation   Hickman, R.J. (Richard)
      • [BioC] DESeq Variance Stabilizing Transformation   Michael Love
      • [BioC] DESeq Variance Stabilizing Transformation   Wolfgang Huber
• [BioC] topGO desperation   Oertlin, Christian (Stud. FHML)
  • [BioC] topGO desperation   James W. MacDonald
  • [BioC] topGO desperation   Oertlin, Christian (Stud. FHML)
    • [BioC] topGO desperation   James W. MacDonald
• [BioC] HTqPCR error when reading data   Magdalena Wozniak
• [BioC] Combining differential gene expression on 2 reference transcriptomes: EdgeR analysis   Eshita
  • [BioC] Combining differential gene expression on 2 reference transcriptomes: EdgeR analysis   Gordon K Smyth
• [BioC] Advice on reading big BED/BAM and ChIP-seq quality control   Hari Easwaran
  • [BioC] Advice on reading big BED/BAM and ChIP-seq quality control   Martin Morgan
    • [BioC] Advice on reading big BED/BAM and ChIP-seq quality control   Steve Lianoglou
  • [BioC] Advice on reading big BED/BAM and ChIP-seq quality control   Michael Stadler
    • [BioC] Advice on reading big BED/BAM and ChIP-seq quality control   Steve Lianoglou
      • [BioC] Advice on reading big BED/BAM and ChIP-seq quality control   Hari Easwaran
      • [BioC] Advice on reading big BED/BAM and ChIP-seq quality control   Ugo Borello
• [BioC] Hyperdraw: bidirectional edges   hettling
  • [BioC] Hyperdraw: bidirectional edges   Paul Murrell
• [BioC] Bioinformatics Job at University of Münster   Hans-Ulrich Klein
• [BioC] GOseq   Yemmy [guest]
• [BioC] Nearest Template Prediction?   Siefker, Ed B.
  • [BioC] Nearest Template Prediction?   Tim Triche, Jr.
• [BioC] Accessing old versions of bioc packages   Julian Gehring
  • [BioC] Accessing old versions of bioc packages   Dan Tenenbaum
    • [BioC] Accessing old versions of bioc packages   Julian Gehring
      • [BioC] Accessing old versions of bioc packages   Dan Tenenbaum
      • [BioC] Accessing old versions of bioc packages   Wolfgang Huber
• [BioC] VCF class: different length when unlisting INFO CompressedCharacterList   Francesco Lescai
  • [BioC] VCF class: different length when unlisting INFO CompressedCharacterList   Valerie Obenchain
    • [BioC] VCF class: different length when unlisting INFO CompressedCharacterList   Martin Morgan
      • [BioC] VCF class: different length when unlisting INFO CompressedCharacterList   Francesco Lescai
• [BioC] DESeq multifactor design paired analysis   Natasha Sahgal
  • [BioC] DESeq multifactor design paired analysis   Natasha Sahgal
    • [BioC] DESeq multifactor design paired analysis   Michael Love
      • [BioC] DESeq multifactor design paired analysis   Natasha Sahgal
• [BioC] Gviz   Fiorella Schischlik [guest]
  • [BioC] Gviz   Hahne, Florian
    • [BioC] Gviz   Steve Lianoglou
      • [BioC] Gviz   Steffen Durinck
• [BioC] Queries about getting annotation post-Limma analysis   Jeremy Ng
  • [BioC] Queries about getting annotation post-Limma analysis   Paul Shannon
    • [BioC] Queries about getting annotation post-Limma analysis   James W. MacDonald
      • [BioC] Queries about getting annotation post-Limma analysis   Jeremy Ng
      • [BioC] Queries about getting annotation post-Limma analysis   James W. MacDonald
• [BioC] VariantAnnotation: Performance and memory issues in readVcf   Ulrich Bodenhofer
  • [BioC] VariantAnnotation: Performance and memory issues in readVcf   Ulrich Bodenhofer
  • [BioC] VariantAnnotation: Performance and memory issues in readVcf   Vincent Carey
    • [BioC] VariantAnnotation: Performance and memory issues in readVcf   Ulrich Bodenhofer
      • [BioC] VariantAnnotation: Performance and memory issues in readVcf   Vincent Carey
      • [BioC] VariantAnnotation: Performance and memory issues in readVcf   Valerie Obenchain
      • [BioC] VariantAnnotation: Performance and memory issues in readVcf   Valerie Obenchain
      • [BioC] VariantAnnotation: Performance and memory issues in readVcf   Ulrich Bodenhofer
• [BioC] edgeR warning message when running Trended Dispersion   Natasha Sahgal
  • [BioC] edgeR warning message when running Trended Dispersion   Natasha Sahgal
  • [BioC] edgeR warning message when running Trended Dispersion   Gordon K Smyth
    • [BioC] edgeR warning message when running Trended Dispersion   Natasha Sahgal
      • [BioC] edgeR warning message when running Trended Dispersion   Steve Lianoglou
      • [BioC] edgeR warning message when running Trended Dispersion   Natasha Sahgal
      • [BioC] edgeR warning message when running Trended Dispersion   Gordon K Smyth
      • [BioC] edgeR warning message when running Trended Dispersion   Natasha Sahgal
• [BioC] help with flowQ vignette   Frederico Moraes Ferreira
  • [BioC] help with flowQ vignette   Dan Tenenbaum
    • [BioC] help with flowQ vignette   Frederico Moraes Ferreira
    • [BioC] help with flowQ vignette   Dan Tenenbaum
• [BioC] Help with nparLD package: Non-parametric repeated measures   James [guest]
  • [BioC] Help with nparLD package: Non-parametric repeated measures   James W. MacDonald
• [BioC] SCAN-UPC: 12079 of 22283 probes returned for hgu133a CELs?   Steve Piccolo
  • [BioC] SCAN-UPC: 12079 of 22283 probes returned for hgu133a CELs?   Andrew Yates
• [BioC] summarizeOverlaps mode ignoring inter feature overlaps   Valerie Obenchain
  • [BioC] summarizeOverlaps mode ignoring inter feature overlaps   Thomas Girke
• [BioC] limma: NA coefficients due to missing values   Shi, Tao
  • [BioC] limma: NA coefficients due to missing values   Gordon K Smyth
    • [BioC] limma: NA coefficients due to missing values   Shi, Tao
• [BioC] RTPCR - concentration rather than Ct   Lavinia Gordon
• [BioC] Job Opportunity: Senior Bioinformatics Analyst at the University of Cambridge (Cancer Research UK)   Rory Stark
• [BioC] summarizeOverlaps, inter.feature=FALSE and mode="IntersectionNotEmpty"   Michael Love
  • [BioC] summarizeOverlaps, inter.feature=FALSE and mode="IntersectionNotEmpty"   Valerie Obenchain
  • [BioC] summarizeOverlaps, inter.feature=FALSE and mode="IntersectionNotEmpty"   Thomas Girke
    • [BioC] summarizeOverlaps, inter.feature=FALSE and mode="IntersectionNotEmpty"   Valerie Obenchain
• [BioC] gmapR problem using a GmapGenome package with gsnap()   Robert Castelo
  • [BioC] gmapR problem using a GmapGenome package with gsnap()   Michael Lawrence
• [BioC] PAM: Applying published classifiers   Ed Siefker
  • [BioC] PAM: Applying published classifiers   Ed Siefker
    • [BioC] PAM: Applying published classifiers   James W. MacDonald
    • [BioC] PAM: Applying published classifiers   Ryan C. Thompson
      • [BioC] PAM: Applying published classifiers   Ed Siefker
      • [BioC] PAM: Applying published classifiers   Ryan C. Thompson
• [BioC] [Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?   Lucia Peixoto
  • [BioC] [Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?   Wolfgang Huber
    • [BioC] [Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?   Lucia
      • [BioC] [Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?   Simon Anders
      • [BioC] [Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?   Lucia
      • [BioC] [Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?   Simon Anders
      • [BioC] [Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?   Simon Anders
      • [BioC] [Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?   Wang Peter
      • [BioC] [Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?   Lucia Peixoto
      • [BioC] [Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?   Wolfgang Huber
      • [BioC] [Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?   Lucia Peixoto
      • [BioC] [Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?   Steve Lianoglou
      • [BioC] [Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?   Robert Castelo
      • [BioC] [Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?   Kasper Daniel Hansen
      • [BioC] [Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?   Simon Anders
      • [BioC] [Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?   Moritz Hess
      • [BioC] [Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?   Thomas Girke
      • [BioC] [Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?   Ryan C. Thompson
      • [BioC] voom: CPM, FPKM and base counts   Gordon K Smyth
      • [BioC] [Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?   Wolfgang Huber
      • [BioC] [Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?   Thomas Girke
      • [BioC] [Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?   Simon Anders
      • [BioC] [Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?   Simon Anders
      • [BioC] [Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?   Thomas Girke
      • [BioC] [Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?   Simon Anders
      • [BioC] [Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?   Yuan Hao
      • [BioC] [Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?   Thomas Girke
  • [BioC] [Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?   Steve Lianoglou
    • [BioC] [Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?   Steve Lianoglou
• [BioC] timecourse for RNA-seq data   FRANKLIN JOHNSON [guest]
• [BioC] meme/fimo output parser?   Vincent Carey
• [BioC] an error in HeatPlus package   Adriana Munoz
  • [BioC] an error in HeatPlus package   Dan Tenenbaum
• [BioC] Working with non-type strain annotation   Thomas Dybdal Pedersen
  • [BioC] Working with non-type strain annotation   Marc Carlson
• [BioC] DiffBind - error dba-count   Paolo Kunderfranco
  • [BioC] DiffBind - error dba-count   Rory Stark
• [BioC] DEXSeq on two-exon genes: how to specify a formula without redundant terms   Narayanan, Manikandan (NIH/NIAID) [E]
  • [BioC] DEXSeq on two-exon genes: how to specify a formula without redundant terms   Narayanan, Manikandan (NIH/NIAID) [E]
    • [BioC] DEXSeq on two-exon genes: how to specify a formula without redundant terms   Alejandro Reyes
      • [BioC] DEXSeq on two-exon genes: how to specify a formula without redundant terms   Narayanan, Manikandan (NIH/NIAID) [E]
      • [BioC] -which() pitfall in subsetting exressions   Wolfgang Huber
• [BioC] library(\"geneplotter\") fails on load   Ron Eisler [guest]
• [BioC] analyze three factors in Limma   Ingrid Dahlman
  • [BioC] analyze three factors in Limma   Gordon K Smyth
• [BioC] problem with aveLogCPM.default in edgeR   suzy.stiegelmeyer at syngenta.com
  • [BioC] problem with aveLogCPM.default in edgeR   Gordon K Smyth
• [BioC] QuasR: how to use an indexed reference genome?   Paul Shannon
  • [BioC] QuasR: how to use an indexed reference genome?   Michael Stadler
    • [BioC] QuasR: how to use an indexed reference genome?   Paul Shannon
    • [BioC] QuasR: how to use an indexed reference genome?   Michael Stadler
      • [BioC] QuasR: how to use an indexed reference genome?   Paul Shannon
      • [BioC] QuasR: how to use an indexed reference genome?   Tim Triche, Jr.
      • [BioC] QuasR: how to use an indexed reference genome?   Michael Stadler
    • [BioC] QuasR: how to use an indexed reference genome?   Martin Morgan
      • [BioC] QuasR: how to use an indexed reference genome?   Michael Stadler
• [BioC] Creating an OrganismDbi package with a few transcript annotations   Michael Lawrence
  • [BioC] Creating an OrganismDbi package with a few transcript annotations   Martin Morgan
    • [BioC] Creating an OrganismDbi package with a few transcript annotations   Michael Lawrence
      • [BioC] Creating an OrganismDbi package with a few transcript annotations   Marc Carlson
      • [BioC] Creating an OrganismDbi package with a few transcript annotations   Michael Lawrence
      • [BioC] Creating an OrganismDbi package with a few transcript annotations   Marc Carlson
      • [BioC] Creating an OrganismDbi package with a few transcript annotations   Michael Lawrence
• [BioC] how to deal with antisense gene in DESeq or edgeR?   Wang Peter
• [BioC] looking for tools to study additive expression effects in gene pathways/networks   chris_utah
• [BioC] Bioconductor error   Alexia Cardona
  • [BioC] Bioconductor error   Dan Tenenbaum
  • [BioC] Bioconductor error   Steve Lianoglou
    • [BioC] Bioconductor error   Thomas Maurel
• [BioC] Genentech Bioinformatics is seeking R programming contractors   Michael Lawrence
• [BioC] R crash on getBM query   Mazzarotto, Francesco
  • [BioC] R crash on getBM query   Sean Davis
• [BioC] ShortRead 3' trimming negative length vectors are not allowed   Sam McInturf
  • [BioC] ShortRead 3' trimming negative length vectors are not allowed   Martin Morgan
    • [BioC] ShortRead 3' trimming negative length vectors are not allowed   Sam McInturf
      • [BioC] ShortRead 3' trimming negative length vectors are not allowed   Sam McInturf
      • [BioC] ShortRead 3' trimming negative length vectors are not allowed   Martin Morgan
      • [BioC] ShortRead 3' trimming negative length vectors are not allowed   Marcus Davy
• [BioC] Reminder: Course: Intermediate R / Bioconductor for High-Throughput Sequence Analysis, 28-29 May, Seattle   Martin Morgan
• [BioC] [devteam-bioc] sort error in GRange   Valerie Obenchain
• [BioC] Annotation of Human Exon 1.0 ST   Laura [guest]
  • [BioC] Annotation of Human Exon 1.0 ST   rcaloger
  • [BioC] Annotation of Human Exon 1.0 ST   Benilton Carvalho
• [BioC] summarizeOverlaps: ambiguous method dispatch   Michael Lawrence
  • [BioC] summarizeOverlaps: ambiguous method dispatch   Martin Morgan
• [BioC] error when using pdInfoBuilder   Paul Sanfilippo [guest]
  • [BioC] error when using pdInfoBuilder   James W. MacDonald
    • [BioC] error when using pdInfoBuilder   Paul Sanfilippo
      • [BioC] error when using pdInfoBuilder   James W. MacDonald
• [BioC] Limma, model with several factors   Ingrid Dahlman [guest]
  • [BioC] Limma, model with several factors   Ryan C. Thompson
    • [BioC] Limma, model with several factors   Ryan C. Thompson
  • [BioC] Limma, model with several factors   Gordon K Smyth
• [BioC] Average expression value from limma   Ekta Jain
  • [BioC] Average expression value from limma   Paul Geeleher
  • [BioC] Average expression value from limma   Ekta Jain
    • [BioC] Average expression value from limma   Paul Geeleher
  • [BioC] Average expression value from limma   Gordon K Smyth
• [BioC] affy plus2 array - unclear probeset signal   andrea.grilli at ior.it
• [BioC] Chip-seq pipeline and cloud ami questions   Christopher Howerton
• [BioC] DEXSeq: formulas for testForDEUTRT   Christopher DeBoever
  • [BioC] DEXSeq: formulas for testForDEUTRT   Narayanan, Manikandan (NIH/NIAID) [E]
• [BioC] Filtering is not recommended with LIMMA?   Garcia Orellana,Miriam
  • [BioC] Filtering is not recommended with LIMMA?   Wolfgang Huber
  • [BioC] Filtering is not recommended with LIMMA?   Gordon K Smyth
    • [BioC] Filtering is not recommended with LIMMA?   Garcia Orellana,Miriam
    • [BioC] Filtering is not recommended with LIMMA?   Wolfgang Huber
• [BioC] multiple feature/mode counting with summarizeOverlaps   Thomas Girke
  • [BioC] multiple feature/mode counting with summarizeOverlaps   Valerie Obenchain
  • [BioC] multiple feature/mode counting with summarizeOverlaps   Thomas Girke
    • [BioC] multiple feature/mode counting with summarizeOverlaps   Valerie Obenchain
• [BioC] DEXSeq for 1 gene   Mallon, Eamonn B. (Dr.)
  • [BioC] DEXSeq for 1 gene   Alejandro Reyes
    • [BioC] DEXSeq for 1 gene   Eamonn Mallon
      • [BioC] DEXSeq for 1 gene   Wolfgang Huber
      • [BioC] DEXSeq for 1 gene   Mallon, Eamonn B. (Dr.)
  • [BioC] DEXSeq for 1 gene   Alejandro Reyes
    • [BioC] DEXSeq for 1 gene   Mallon, Eamonn B. (Dr.)
• [BioC] Package \'jmosaics\' not found   Mahmoud [guest]
  • [BioC] Package \'jmosaics\' not found   Steve Lianoglou
    • [BioC] Package \'jmosaics\' not found   James W. MacDonald
• [BioC] Analyzing Agilent Human DNA Methylation Microarray   Arpit Jain
• [BioC] problem with contrast.matrix and eBayes in limma   Oihane Irazoki [guest]
  • [BioC] problem with contrast.matrix and eBayes in limma   Gordon K Smyth
• [BioC] edgeR MDS   Manoj Hariharan
  • [BioC] edgeR MDS   Gordon K Smyth
    • [BioC] edgeR MDS   Jose M Garcia Manteiga
      • [BioC] edgeR MDS   Gordon K Smyth
• [BioC] bug (?) in selectHKgenes() related to geomMean() in SLqPCR package (with fix)   Davis, Wade
• [BioC] rBiopaxParser, Reactome and namespaces   Paul Shannon
  • [BioC] rBiopaxParser, Reactome and namespaces   Frank Kramer
    • [BioC] rBiopaxParser, Reactome and namespaces   Paul Shannon
      • [BioC] rBiopaxParser, Reactome and namespaces   Frank Kramer
      • [BioC] rBiopaxParser, Reactome and namespaces   Paul Shannon
• [BioC] cellHTS2 PlateList order problem   Mark Dane
  • [BioC] cellHTS2 PlateList order problem   Wolfgang Huber
• [BioC] How do I background correct an Illumina eset without using lumiB?   Emma Bell [guest]
  • [BioC] How do I background correct an Illumina eset without using lumiB?   Pan Du
• [BioC] [biomaRt] Finding Orthologs genes between Human and Mouse - problem with getBM to retrieve some attributes   Benjamin Dubreuil
  • [BioC] [biomaRt] Finding Orthologs genes between Human and Mouse - problem with getBM to retrieve some attributes   Steffen Durinck
    • [BioC] [biomaRt] Typo in human Attributes name ?   Benjamin Dubreuil
      • [BioC] [BioMart Users] [biomaRt] Typo in human Attributes name ?   Thomas Maurel
• [BioC] ChIPpeakAnno makeVennDiagram problems   Vincent Schulz
  • [BioC] ChIPpeakAnno makeVennDiagram problems   Zhu, Lihua (Julie)
  • [BioC] ChIPpeakAnno makeVennDiagram problems   Zhu, Lihua (Julie)
• [BioC] limma eBayes warning   Charles Determan Jr
• [BioC] tutorials for RNA-seq analysis in Bioconductor   Fiona Ingleby
  • [BioC] tutorials for RNA-seq analysis in Bioconductor   Steve Lianoglou
    • [BioC] tutorials for RNA-seq analysis in Bioconductor   Hans-Rudolf Hotz
• [BioC] cellHTS Repeat Values in Text Output   Mark Dane
  • [BioC] cellHTS Repeat Values in Text Output   Joseph Barry
• [BioC] How to analyze Agilent DNA Methylation Microarray Analysis   Arpit Jain [guest]
• [BioC] minfi: Problem with GenomicMethylSet   Gustavo Fernández Bayón
  • [BioC] minfi: Problem with GenomicMethylSet   Gustavo Fernández Bayón
    • [BioC] minfi: Problem with GenomicMethylSet   Kasper Daniel Hansen
      • [BioC] minfi: Problem with GenomicMethylSet   Kasper Daniel Hansen
• [BioC] Microarray time series experiment   Natasha Sahgal
  • [BioC] biomaRt inter_paralog attribute error   Remo Sanges
    • [BioC] biomaRt inter_paralog attribute error   Steffen Durinck
• [BioC] problem installing limma   Ina Hoeschele
  • [BioC] problem installing limma   Ina Hoeschele
• [BioC] Installation Problems   Rishi Sinha [guest]
  • [BioC] Installation Problems   Steve Lianoglou
    • [BioC] Installation Problems   Steve Lianoglou
• [BioC] How do I background correct an Illumina eset without using lumiB   Gordon K Smyth
• [BioC] RNAseq less sensitive than microarrays? Is it a statistical issue?   Gordon K Smyth
• [BioC] biomaRt: refseq gene details   Tim Smith
  • [BioC] biomaRt: refseq gene details   Steffen Durinck
• [BioC] Error in sort(abs(diff(genomdat)))[1:n.keep]   Conan [guest]
  • [BioC] Error in sort(abs(diff(genomdat)))[1:n.keep]   SeshanV at mskcc.org
• [BioC] HTqPCR with mixed template   Penny, Susanne
• [BioC] method or package to detect genes expressed in a specific tissue comparing to other tissues   shirley zhang
• [BioC] DEXSeq error: Count files do not correspond to the flattened annotation file   Darwin Sorento Dichmann
  • [BioC] DEXSeq error: Count files do not correspond to the flattened annotation file   Simon Anders
    • [BioC] DEXSeq error: Count files do not correspond to the flattened annotation file   Darwin Sorento Dichmann
• [BioC] Differential expression testing for groups with unequal variances/dispersions?   Ryan C. Thompson
  • [BioC] Differential expression testing for groups with unequal variances/dispersions?   Gordon K Smyth
    • [BioC] Differential expression testing for groups with unequal variances/dispersions?   Ryan C. Thompson
      • [BioC] Differential expression testing for groups with unequal variances/dispersions?   Gordon K Smyth
• [BioC] DESeq no recognizing row.names   Alicia R. Pérez-Porro
  • [BioC] DESeq no recognizing row.names   Simon Anders
  • [BioC] DESeq no recognizing row.names   Steve Lianoglou
    • [BioC] DESeq no recognizing row.names   Alicia R. Pérez-Porro
      • [BioC] DESeq no recognizing row.names   Steve Lianoglou
• [BioC] DEXSeq User Friendly Guide (Start to Finish)   Margaret Linan
  • [BioC] DEXSeq User Friendly Guide (Start to Finish)   Steve Lianoglou
• [BioC] About the DiffBind dba.count() crash problems   kentanaka at chiba-u.jp
  • [BioC] About the DiffBind dba.count() crash problems   Gordon Brown
    • [BioC] About the DiffBind dba.count() crash problems   kentanaka at chiba-u.jp
• [BioC] fRMA without using ReadAffy()   S.D. Chorlton
  • [BioC] fRMA without using ReadAffy()   Matthew McCall
• [BioC] DEXSeq Problems   Margaret Linan
  • [BioC] DEXSeq Problems   Simon Anders
• [BioC] DEXSeq: Creating sample   Margaret Linan
  • [BioC] DEXSeq: Creating Sample   Margaret Linan
    • [BioC] DEXSeq: Creating Sample   Martin Morgan
• [BioC] Howto annotate blast subject.id with AnnotationDbi   Arnaud Mounier
  • [BioC] Howto annotate blast subject.id with AnnotationDbi   Marc Carlson
    • [BioC] Howto annotate blast subject.id with AnnotationDbi   Arnaud Mounier
      • [BioC] Howto annotate blast subject.id with AnnotationDbi   Marc Carlson
      • [BioC] Howto annotate blast subject.id with AnnotationDbi   Arnaud Mounier
• [BioC] unimart web Service not available   Kathrin Otte [guest]
  • [BioC] unimart web Service not available   Steffen Durinck
    • [BioC] unimart web Service not available   Steffen Durinck
• [BioC] DESeq Variance Stabilizing Transformation (now with non-embedded images)   Hickman, R.J. (Richard)
  • [BioC] DESeq Variance Stabilizing Transformation (now with non-embedded images)   Michael Love
• [BioC] EdgeR questions about exactTest and plotMDS function   Amos Kirilovsky
  • [BioC] EdgeR questions about exactTest and plotMDS function   Mark Robinson
  • [BioC] EdgeR questions about exactTest and plotMDS function   Gordon K Smyth
    • [BioC] EdgeR questions about exactTest and plotMDS function   Amos Kirilovsky
• [BioC] DESeq2 - Different results between groups depending on which is first   Elin Videvall
  • [BioC] DESeq2 - Different results between groups depending on which is first   Michael Love
    • [BioC] DESeq2 - Different results between groups depending on which is first   Elin Videvall
      • [BioC] DESeq2 - Different results between groups depending on which is first   Michael Love
• [BioC] minfi: Meth and Unmeth = 0 resulting in beta = NaN?   Hooiveld, Guido
  • [BioC] minfi: Meth and Unmeth = 0 resulting in beta = NaN?   Kasper Daniel Hansen
• [BioC] delta table interpretation in samr package   Xiang [guest]
• [BioC] Agilent Dual channel array input & marray   Guillermo Marco Puche
• [BioC] error when installing package oligo   Wolfgang Raffelsberger
  • [BioC] error when installing package oligo   Martin Morgan
• [BioC] FDR in DESeq2   Kisun Pokharel
  • [BioC] FDR in DESeq2   Michael Love
• [BioC] ChIPpeakAnno   Zhu, Lihua (Julie)
• [BioC] Regarding CDF file   deepika lakhwani
  • [BioC] Regarding CDF file   Fiona Ingleby
  • [BioC] Regarding CDF file   James W. MacDonald
    • [BioC] Regarding CDF file   James W. MacDonald
      • [BioC] Regarding CDF file   cstrato
• [BioC] 2x3 factorial experiment   Ilario De Toma
  • [BioC] 2x3 factorial experiment   James W. MacDonald
• [BioC] Reminder: Practical Workshop on High-Throughput Sequencing Data Analysis. 30 Sep - 4 Oct 2013, OIST, Okinawa, Japan   Kathi Zarnack
• [BioC] DEXSeq Issue   Margaret Linan
  • [BioC] DEXSeq Issue   Michael Love
    • [BioC] DEXSeq Issue   Margaret Linan
      • [BioC] DEXSeq Issue   Alejandro Reyes
• [BioC] Block design with voom and limma for multi-level experiment   Brad Rosenberg [guest]
  • [BioC] Block design with voom and limma for multi-level experiment   Charity Law
• [BioC] DESeq normalisation strategy   Davide Cittaro
  • [BioC] DESeq normalisation strategy   Simon Anders
    • [BioC] DESeq normalisation strategy   Davide Cittaro
• [BioC] custon Cdf file   deepika lakhwani
  • [BioC] custon Cdf file   James W. MacDonald
• [BioC] rsbml installation fails on MacOS with libsbml 3   Hannes Hettling [guest]
  • [BioC] rsbml installation fails on MacOS with libsbml 3   Hannes Hettling [guest]
    • [BioC] rsbml installation fails on MacOS with libsbml 3   Michael Lawrence
      • [BioC] rsbml installation fails on MacOS with libsbml 3   Dan Tenenbaum
• [BioC] GoSeq error!   Emanuela
  • [BioC] GoSeq error!   Nadia Davidson
• [BioC] CIGAR and seq lengths differ after trimming   Sam McInturf
  • [BioC] CIGAR and seq lengths differ after trimming   Martin Morgan
• [BioC] Turning a GRanges Metadata Column into Rle List   Dario Strbenac
• [BioC] Regarding Root installation   deepika lakhwani
  • [BioC] Regarding Root installation   cstrato
• [BioC] gCMAP for windows?   Christopher Howerton
  • [BioC] gCMAP for windows?   Dan Tenenbaum
    • [BioC] gCMAP for windows?   Christopher Howerton
      • [BioC] gCMAP for windows?   Dan Tenenbaum
• [BioC] Problems with edgeR package   Eduardo Andrés León
  • [BioC] Problems with edgeR package   Mark Robinson
    • [BioC] [SOLVED] Problems with edgeR package   Eduardo Andrés León
• [BioC] does contamination bother the normalization in transcriptome analysis   Wang Peter
• [BioC] GWATools use in creating ncdf files   Stephanie M. Gogarten
  • [BioC] GWATools use in creating ncdf files   Sam Rose
  • [BioC] GWATools use in creating ncdf files   Stephanie M. Gogarten
  • [BioC] GWATools use in creating ncdf files   Sam Rose
• [BioC] copy number segment calling with cn.mop when just one sample?   Paul Shannon
• [BioC] Bioc 2013 Conference in Seattle, July 18-19 -- Updates   Martin Morgan
• [BioC] From location to get the SNP rs ID   Fabrice Tourre
  • [BioC] From location to get the SNP rs ID   Hervé Pagès
    • [BioC] From location to get the SNP rs ID   Fabrice Tourre
      • [BioC] From location to get the SNP rs ID   Hervé Pagès
• [BioC] virtualArray package - Error while combing data sets   Atul Kakrana
• [BioC] frmaTools library error :: makeVectorsAffyBatch() function   Tae-Hoon Chung
  • [BioC] frmaTools library error :: makeVectorsAffyBatch() function   Matthew McCall
• [BioC] Semantics of GenomicRanges gaps()   Alex Gutteridge
• [BioC] proper way to handle small changes from different package versions   Juliet Hannah
  • [BioC] proper way to handle small changes from different package versions   James W. MacDonald
    • [BioC] proper way to handle small changes from different package versions   Juliet Hannah
      • [BioC] proper way to handle small changes from different package versions   Dan Tenenbaum
      • [BioC] proper way to handle small changes from different package versions   Juliet Hannah
• [BioC] Error to import Data Affymetrix   Auger Steven [guest]
  • [BioC] Error to import Data Affymetrix   Steve Lianoglou
• [BioC] Reading Affy CEL files   Ranjani R [guest]
  • [BioC] Reading Affy CEL files   James W. MacDonald

Last message date: Fri May 31 21:34:47 CEST 2013
Archived on: Fri May 31 23:38:30 CEST 2013

• Messages sorted by: [ subject ] [ author ] [ date ]
• More info on this list...