[BioC] Regarding CDF file

[James W. MacDonald]

Hi Deepika,

On 5/28/2013 9:58 AM, deepika lakhwani wrote:
> Dear Sir,
>
> I have arabidopsis cel files and for differential expression analysis, i am
> using AffylmGUI package but its not running because AraGene-1_0-st CDF file
> is not available on http://www.bioconductor.org/data/metaData.html site and
> when i downloaded the data from affymetrix site, there are so many files
> such as PGF, CLF, QCC files in it but no CDF files. what should i do ?
> Please suggest me. Can you upload the AraGene-1_0-st CDF file or is there
> any other solution for it.

You should be processing these arrays using either oligo or xps. If you 
use oligo, the correct file will automatically be downloaded for you.

Best,

Jim



>
>
> ThankingYou
>
>
>
> regards
> Deepika
>
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>
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-- 
James W. MacDonald, M.S.
Biostatistician
University of Washington
Environmental and Occupational Health Sciences
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