[BioC] help with flowQ vignette
Frederico Moraes Ferreira
ferreirafm at usp.br
Tue May 14 20:22:05 CEST 2013
Hi List,
I'm following the flowQ vignette (DataQualityAssessment.R) and get
stucked in the transformation bellow.
I've check manuals, google and ?transformList and can't figure out
what's wrong.
Please, could someone give me a hand?
> load("qData.rda")
> qData[[1]][[1]]
flowFrame object 'pid02050'
with 4500 cells and 8 observables:
name desc range minRange maxRange
$P1 FSC-A FSC-A 1024 0 1023
$P2 SSC-A SSC-A 1024 0 1023
$P3 FITC-A CD45RA 1024 1 10000
$P4 PE-A CD45RO 1024 1 10000
$P5 FL3-A CD8 1024 1 10000
$P6 PE-Cy7-A CD4 1024 1 10000
$P7 APC-A CD62L 1024 1 10000
$P8 Time <NA> 1024 0 1023
82 keywords are stored in the 'description' slot
> tData <- lapply(qData, function(x) transformList(colnames(x)[3:7],
asinh) %on% x)
Error in FUN(X[[1L]], ...) : could not find function "%on%"
> R.version
_
platform x86_64-pc-linux-gnu
arch x86_64
os linux-gnu
system x86_64, linux-gnu
status
major 3
minor 0.0
year 2013
month 04
day 03
svn rev 62481
language R
version.string R version 3.0.0 (2013-04-03)
nickname Masked Marvel
> biocLite()
BioC_mirror: http://bioconductor.org
Using Bioconductor version 2.12 (BiocInstaller 1.10.1), R version 3.0.0.
Best,
--
Dr. Frederico Moraes Ferreira
University of Sao Paulo
Heart Institute, School of Medicine
Laboratoy of Immunology
Av. Dr. Enéas de Carvalho Aguiar, 44
05403-900 Sao Paulo - SP
Brasil
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