[BioC] libxml2: incompatible library

[Fred [guest]]

Hi list, 
I was try to install the flowStats package from Bioc and R stoped in checking phase before compilation. Here goes the log error.
#######################################################
* installing *source* package ‘XML’ ...
** package ‘XML’ successfully unpacked and MD5 sums checked
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for sed... /bin/sed
checking for pkg-config... /usr/bin/pkg-config
checking for xml2-config... /usr/local/programs/ccp4/ccp4-6.2.0/bin/xml2-config
USE_XML2 = yes
SED_EXTENDED_ARG: -E
Minor 6, Patch 26 for 2.6.26
Located parser file -I/usr/local/xtal/ccp4-6.2.0/include/libxml2/parser.h
Checking for 1.8:  -I/usr/local/xtal/ccp4-6.2.0/include/libxml2
Using libxml2.*
checking for gzopen in -lz... yes
checking for xmlParseFile in -lxml2... yes
You are trying to use a version 2.* edition of libxml
but an incompatible library. The header files and library seem to be
mismatched. If you have specified LIBXML_INCDIR, make certain to also
specify an appropriate LIBXML_LIBDIR if the libxml2 library is not in the default
directories.
ERROR: configuration failed for package ‘XML’
* removing ‘/home/ferreirafm/R/x86_64-pc-linux-gnu-library/3.0/XML’
ERROR: dependency ‘XML’ is not available for package ‘flowWorkspace’
* removing ‘/home/ferreirafm/R/x86_64-pc-linux-gnu-library/3.0/flowWorkspace’
ERROR: dependency ‘flowWorkspace’ is not available for package ‘flowStats’
* removing ‘/home/ferreirafm/R/x86_64-pc-linux-gnu-library/3.0/flowStats’

The downloaded source packages are in
        ‘/tmp/Rtmpur5nj8/downloaded_packages’
Mensagens de aviso perdidas:
1: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
  installation of package ‘XML’ had non-zero exit status
2: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
  installation of package ‘flowWorkspace’ had non-zero exit status
3: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
  installation of package ‘flowStats’ had non-zero exit status
#######################################################
Please, let me know if you need additional information.
Best,
Fred







 -- output of sessionInfo(): 

> sessionInfo() 
R version 3.0.0 (2013-04-03)
Platform: x86_64-pc-linux-gnu (64-bit)

locale:
 [1] LC_CTYPE=pt_BR.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=pt_BR.UTF-8        LC_COLLATE=pt_BR.UTF-8    
 [5] LC_MONETARY=pt_BR.UTF-8    LC_MESSAGES=pt_BR.UTF-8   
 [7] LC_PAPER=C                 LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=pt_BR.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] parallel  stats     graphics  grDevices utils     datasets  methods  
[8] base     

other attached packages:
[1] flowCore_1.26.0      rrcov_1.3-3          pcaPP_1.9-49        
[4] mvtnorm_0.9-9994     robustbase_0.9-7     Biobase_2.20.0      
[7] BiocGenerics_0.6.0   BiocInstaller_1.10.1

loaded via a namespace (and not attached):
[1] feature_1.2.8 graph_1.38.0  ks_1.8.12     MASS_7.3-26   stats4_3.0.0 
[6] tools_3.0.0 

--
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