[BioC] problem installing limma

[Ina Hoeschele]

sorry please forget previous post - I fixed it ...

----- Original Message -----
From: "Ina Hoeschele" <inah at vbi.vt.edu>
To: "bioconductor" <bioconductor at stat.math.ethz.ch>, "bioconductor" <bioconductor at stat.math.ethz.ch>
Sent: Thursday, May 23, 2013 1:49:29 PM
Subject: [BioC] problem installing limma

Hi,
when I try to install limma, I get the error message below. Can someone please give me a hint - thanks, Ina

 installing *source* package ‘limma’ ...
** libs
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG      -fpic  -O3 -pipe  -g  -c normexp.c -o normexp.o
normexp.c: In function ‘fit_saddle_nelder_mead’:
normexp.c:153: warning: floating constant exceeds range of ‘double’
gcc -std=gnu99 -shared -o limma.so normexp.o -L/usr/lib64/R/lib -lR
installing to /usr/local/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
Error : unknown namespace directive: function(lib, pkg) require(methods)
ERROR: lazy loading failed for package ‘limma’
* removing ‘/usr/local/lib/R/site-library/limma’

> sessionInfo()
R version 3.0.0 (2013-04-03)
Platform: x86_64-pc-linux-gnu (64-bit)

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=C                 LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

loaded via a namespace (and not attached):
[1] tcltk_3.0.0 tools_3.0.0

_______________________________________________
Bioconductor mailing list
Bioconductor at r-project.org
https://stat.ethz.ch/mailman/listinfo/bioconductor
Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor