[BioC] Howto annotate blast subject.id with AnnotationDbi

[Marc Carlson]

Unfortunately no.  Those IDs are not present in the org.At.eg.db package 
as this is a gene-level annotation package.  These kinds of IDs have 
never been included in this package, although I guess that we could 
consider adding them at some point in the future.

   Marc



On 05/29/2013 05:49 AM, Arnaud Mounier wrote:
> Hi everybody, Hi Marc,
>
> Le 28/05/2013 19:37, Marc Carlson a écrit :
>> Hi Arnaud,
>>
>> It should be fine as long as you remember that the shortened name is
>> that of the locus ID, and that you are therefore annotating at the gene
>> level (as is the case for all the org packages).
>>
>> You can see the TAIR website for more clarification about what the
>> different IDs mean. Here is a page for the locus ID "AT1G01010":
>>
>> http://www.arabidopsis.org/servlets/TairObject?type=locus&id=137158
>>
>> And here is a page for the gene model "AT1G01010.1":
>>
>> http://www.arabidopsis.org/servlets/TairObject?type=gene&id=138508
> Thank's for your response. So is this possible to interrogate a org 
> package such as org.At.tair.db in gene model level (aka AT1G01010.1) ?
>
> Ar.
>