[BioC] Reactome support for more organisms

[Marc Carlson]

Hi Asta,

reactome.db is useful for several organisms already.  So for example:


library(reactome.db)
## suppose we have some moust entrez gene IDs that are mapped to reactome
## (note: not all of them will be.  Only the subset of IDs that have 
entries in the reactome database.)
keys <- c("100034361", "100037258", "100038833")
select(reactome.db, keys, c("PATHID", "PATHNAME"), 'ENTREZID')


   Marc



On 05/10/2013 03:18 AM, Asta Laiho wrote:
> Hi,
>
> It seems to me the reactome.db package is based on human content of the Reactome database (Entrez identifiers, mappings to  GO, etc). I would be delighted to see support added for other organisms (especially for mouse) as Reactome database anyhow supports them. Any plans for that yet?
>
> - Asta
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