[BioC] Plugins in ensemblVEP

[Valerie Obenchain]

Hi Thomas,

No, the plugins aren't currently implemented ... neither are the 
database/cache options. They are on the TODO and I'll try to get them 
next week.

Valerie


On 05/07/13 11:31, Thomas Sandmann [guest] wrote:
> Hi Valerie,
>
> is there a way to specify the "--plugin" argument for varianteffectpredictor.pl via the VEPParam function ? If not, would it be possible to add it ?
>
> I am referring to plugins as described here:
> http://uswest.ensembl.org/info/docs/variation/vep/vep_script.html#plugins
>
> Thanks a lot !
> Thomas
>
>   -- output of sessionInfo():
>
> NA
>
> --
> Sent via the guest posting facility at bioconductor.org.
>