May 2006 Archives by thread
Starting: Mon May 1 00:58:47 CEST 2006
Ending: Wed May 31 20:47:50 CEST 2006
Messages: 333
- [BioC] error running the example of the widget function in the widgetTools library
hpages at fhcrc.org
- [BioC] When to treat technical reps as biological reps? WAS:Re: 2x2 factorial loop without common reference (pool)
Gordon K Smyth
- [BioC] When to treat technical reps as biological reps? WAS:Re: 2x2 factorial loop without common reference (pool)
Gordon K Smyth
- [BioC] timecourse pkg question
aaron.j.mackey at gsk.com
- [BioC] NAMESPACES, export, and unit tests
Paul Shannon
- [BioC] Memory issues with limma and ImaGen file import
Gordon Smyth
- [BioC] a just.gcrma question
Jianping Jin
- [BioC] biomaRt error
Georg Otto
- [BioC] a just.gcrma question
jjin at email.unc.edu
- [BioC] help, reliability and toptable
Di Wu
- [BioC] GCRMA Fold Change
cap2018 at columbia.edu
- [BioC] help on reliability and toptable, please
Di Wu
- [BioC] Help with the zero.weights option of plotMA3by2 function in Limma package
Florian Chain
- [BioC] question about reliability and toptable
Di Wu
- [BioC] custom cdf files with just.gcrma
D C
- [BioC] FDA soliciting proposals to analyze gene expression datasets
Wolfgang Huber
- [BioC] PhD Student Position in Statistics on Bayesian Methods for Integrated Genomics
Ivo Kwee
- [BioC] question about reliability and toptable
Morten Mattingsdal
- [BioC] problem with CoCiteStats in bioC 1.8
Kimpel, Mark William
- [BioC] Affymetrix Normalization based on the controls?
Khan, Sohail
- [BioC] justGCRMA error in BioC 1.8
echang4 at life.uiuc.edu
- [BioC] makecdfenv, bg.correct
Justin Borevitz
- [BioC] Job announcement: Virginia Commonwealth University
Kellie J. Archer, Ph.D.
- [BioC] Returned mail: Data format error
gboyd at expita.com
- [BioC] base of B-value log in Limma
Richard Friedman
- [BioC] Help with the zero.weights option of plotMA3by2 function in Limma package
Gordon Smyth
- [BioC] Limma and fitFDist()
Gordon Smyth
- [BioC] Ph.D / Postdoctoral Position in Bioinformatics at Johannes Kepler University Linz, Austria
Birgit Hauer
- [BioC] Update getBioC for R 2.3 needed ?
Thierry Sengstag
- [BioC] parameterization or contrast matrix?
bzzandrew at interfree.it
- [BioC] Sam always wants more observations
Charles Crane
- [BioC] Normalization of Affymetrix data using the house keeping controls.
Khan, Sohail
- [BioC] Normalization of Affymetrix data using the house keeping controls.
Khan, Sohail
- [BioC] R hangs when applying johnson.all.pairs.sp (in library RBGL) to some graphs
Dan Bebber
- [BioC] johnson.all.pairs.sp (RBGL) causes R to hang with certain graphs
Dan Bebber
- [BioC] estimation of number of False positive in limma
gregory voisin
- [BioC] microarray conditional regression
Giorgi, Elena
- [BioC] johnson.all.pairs.sp (RBGL) causes R to hang with certain graphs
Dan Bebber
- [BioC] reference design
bzzandrew at interfree.it
- [BioC] problem with GOLOCUSID2GO environment in the GO library
Mattia Pelizzola
- [BioC] probe --> probe set mapping in CDF library files
michael driscoll
- [BioC] Communicating gene-probe relationships to sam
Charles Crane
- [BioC] Communicating gene-probe relationships to sam
Charles Crane
- [BioC] How does BioC map from Probe ID to Entrez Gene?
Jake
- [BioC] How does BioC map from Probe ID to Entrez Gene?
John Zhang
- [BioC] Insterest in this project
Justin Zhang
- [BioC] problem with moe430a version 1.12.0?
Maria Stalteri
- [BioC] base of B-value log in Limma - still not sure
Gordon Smyth
- [BioC] probe --> probe set mapping in CDF library files
michael driscoll
- [BioC] [COURSE] CSAMA'06, few places available
stefano iacus
- [BioC] Communicating gene-probe relationships to sam
Charles C. Berry
- [BioC] Problems with COPA
Francesca Guana
- [BioC] www site problem
Al Ivens
- [BioC] Communicating gene-probe relationships to sam
Justin Borevitz
- [BioC] search archives and annnotate questions
Kimpel, Mark William
- [BioC] search archives and annnotate questions
Kimpel, Mark William
- [BioC] question on decideTests function in limma
CHUNFA C JIE
- [BioC] Building devel affy on Windows - zlib
Wettenhall James
- [BioC] problem with chromosome location in annotations WAS: search archives and annnotate questions
Diego Díez
- [BioC] Building devel affy on Windows - zlib
Wettenhall James
- [BioC] Significancy of not differentially expressed genes
Mike Ferker
- [BioC] default BG subtraction in plotMA...
Jenny Drnevich
- [BioC] background correction in marray
Jake
- [BioC] error in getBioC()
Jenny Drnevich
- [BioC] Merging 2 groups of samples
Lana Schaffer
- [BioC] Missing values with COPA
Francesca Guana
- [BioC] timecourse and day sample preparation effect
Bosotti, Roberta [Nervianoms]
- [BioC] Bugfix in gcrma
James MacDonald
- [BioC] Bug fix in graph package, 1.10.2 now available
Seth Falcon
- [BioC] Rmpi installation in in IBM HCP
Emiliano Barreto_Hernandez
- [BioC] Proportional area Venn diagrams
J.delasHeras at ed.ac.uk
- [BioC] automating makeContrasts call in limma
Greg Finak
- [BioC] RBGL 1.8.1 installation error on linux
Johannes Rainer
- [BioC] Significancy of not differentially expressed genes
Mohammad Esad-Djou
- [BioC] RBGL 1.8.1 installation error on linux
Johannes Rainer
- [BioC] RBGL 1.8.1 installation error on linux
Johannes Rainer
- [BioC] Paired samples and origin question, Limma
Morten Mattingsdal
- [BioC] RBGL 1.8.1 installation error on linux
Johannes Rainer
- [BioC] problem (and temporary solution for) using biomaRt function getGene to query Ensembl rat dataset
Vini Pereira
- [BioC] GOstats and GenePix arrays
Jake
- [BioC] direct text search of PubMed from Bioconductor?
Kimpel, Mark William
- [BioC] Annaffy problem loading metadata
Bornman, Daniel M
- [BioC] GOstats and GenePix arrays
Jake
- [BioC] Annaffy problem loading metadata
Bornman, Daniel M
- [BioC] Affy E. coli FYI
Jenny Drnevich
- [BioC] Workshops on R/BioC in Southern California
Thomas Girke
- [BioC] dChip, liwong, probe response or phi
Hemali Patel
- [BioC] How does Limma calculate the log2 fold change?
Groot, Philip de
- [BioC] Trouble calculating fold-changes - please help
Srinivas Iyyer
- [BioC] subset eset by row broken
Kimpel, Mark William
- [BioC] biomaRt: how to find RCurl package ?
Vladimir Krasikov
- [BioC] subset eset by row broken
Kimpel, Mark William
- [BioC] Postdoc fellowship at EMBL/EBI Cambridge UK
Wolfgang Huber
- [BioC] cannot find CompStatViz package
Diego Díez
- [BioC] European Conf. Computational Biology: Fellowships & Posters
Hershel Safer
- [BioC] Analysis of RT-PCR data
Narendra Kaushik
- [BioC] PhD studentship at EMBL & EBI: image analysis
Wolfgang Huber
- [BioC] getGene function and size limit
TM
- [BioC] Problem downloading Bioconductor
john bermingham
- [BioC] alternative CDF
Tarca, Adi
- [BioC] Simpleaffy QC summary table?
Tarun Nayar
- [BioC] alternative CDF (Tarca, Adi)
rcaloger
- [BioC] biomaRt and wormbase: gene dataset
Giovanni Coppola
- [BioC] affyPLM QC
Tan, Ruimin
- [BioC] affyPLM QC Assessment problem
Tan, Ruimin
- [BioC] error message: linux, unable to start device X11
Mohammad Esad-Djou
- [BioC] a thin hibridisation line
kfbargad at ehu.es
- [BioC] GEOquery and platforms splitting
Bosotti, Roberta [Nervianoms]
- [BioC] limma 3-way interaction
Jake
- [BioC] Memory Issue under WinXP x64 (64 bit Windows XP)
Carleton Garrett
- [BioC] How does Limma calculate the log2 fold change?
Gordon Smyth
- [BioC] geneplot problem
Dario Greco
- [BioC] GEOquery and platforms splitting
Bosotti, Roberta [Nervianoms]
- [BioC] RBGL installation on fedora core 5 (gcc4.1)
Johannes Rainer
- [BioC] Reading flag data from Agilent files
Frederic Capel
- [BioC] graph package users: bug fixes available
Seth Falcon
- [BioC] Bioconductor cookbook?
Heather Erika Hallen
- [BioC] Bioconductor cookbook?
Simon, Reinhard (CIP)
- [BioC] Bioconductor cookbook?
Liaw, Andy
- [BioC] Creating an interactive heatmap
Cornell, John E
- [BioC] simpleAffy, custom chip error
Wittner, Ben, Ph.D.
- [BioC] affxparser users: bug fix in BioC 1.8
Kasper Daniel Hansen
- [BioC] Problems with installation of Rgraphviz
jdmitrie at liacs.nl
- [BioC] Where does BioC metadata come from?
Suraj Menon
- [BioC] Affy's .DTT format?
Jenny Drnevich
- [BioC] plotting GO output as pie charts
Celine Carret
- [BioC] plotting GO output as pie charts
Dick Beyer
- [BioC] Failure to load Biobase
Jenny Drnevich
- [BioC] expression output in simpleaffy
Tarun Nayar
- [BioC] Experiment export in Gene Expression Omnibus (GEO) SOFT format
Henrik Hornshøj Jensen
- [BioC] ASC/NZSA 2006 - Detailed Program Available via the Website
David Scott
- [BioC] loading composite data (bg corrected) into limma
Sharon
- [BioC] Time course experiment and timecourse package
raffaele calogero
- [BioC] Protein/peptide mass
john seers (IFR)
- [BioC] User-defined genes in limma
Heather Erika Hallen
- [BioC] Newbie 'rflowcyt' question; problem loading facscan256.fcs
Ulrik Stervbo
- [BioC] multtest -- unable to load shared library '/Library/Frameworks/R.framework/Resources/library/multtest/libs/multtest.so'
Paul Shannon
- [BioC] Hu25K annotation
Daniel Gatti
- [BioC] Bioconductor Digest, Vol 39, Issue 22
Jiuzhou song
- [BioC] LimmaGUI for illumina data
Roy Williams
- [BioC] rflowcyt and prada questions
dr. Treszl András
- [BioC] Protein/peptide mass
john seers (IFR)
- [BioC] An PhD studentship position or Postdoc position on statistical genomics
Jiuzhou song
- [BioC] Protein/peptide mass
john seers (IFR)
- [BioC] Protein/peptide mass
john seers (IFR)
- [BioC] Protein/peptide mass
Sean Davis
- [BioC] Why mm's changing after bg.adjust.gcrma?
Jenny Drnevich
- [BioC] Free Software Session at CompLife 2006
Thorsten Meinl
- [BioC] Experiment export in Gene Expression Omnibus (GEO) SOFT format
Henrik Hornshøj Jensen
- [BioC] Protein/peptide mass
john seers (IFR)
- [BioC] [JOB] Bioinformatics positions at NCI
Sean Davis
- [BioC] Differential expression
Kimpel, Mark William
- [BioC] reposTools 1.10.0 pointing to BioC1.7 not 1.8
Roels, Steven
- [BioC] getting a list of packages by biocView tags
Roels, Steven
- [BioC] problems to install Bioconductor packages in OSX
szhan at uoguelph.ca
- [BioC] Bayesian networks in BioC
Jacob Michaelson
- [BioC] Question regarding handling technical replicates for Affy arrays
noel0925 at sbcglobal.net
- [BioC] The proper way of analysisng FACS-data; Question off topis?
Ulrik Stervbo
- [BioC] Question regarding handling technical replicates for Affy arrays
Gordon K Smyth
- [BioC] CTBG Deploys World's Only Fully Rotating Well Fishing Tools - Ref. o38015
Ila Dodson
- [BioC] Question regarding handling technical replicates for Affy arrays
noel0925 at sbcglobal.net
- [BioC] Normexp background correction.
Alpha Diallo
- [BioC] viral question
J F
- [BioC] Question regarding handling technical replicates for Affy arrays
Gordon K Smyth
- [BioC] CTBG Deploys World's Only Fully Rotating Well Fishing Tools - Ref. mjh111205
Barney Marcus
- [BioC] help in creating custom venn diagrams from multiple contrasts
Triantafyllos Paparountas
- [BioC] help in creating custom venn diagrams from multiple contrasts
Triantafyllos Paparountas
- [BioC] question about design
J.delasHeras at ed.ac.uk
- [BioC] when dimensionality is larger than the number of observations?
Weiwei Shi
- [BioC] Limma contrasts questions
Sean Davis
- [BioC] VennDiagram quesiont in limma
Jianping Jin
- [BioC] [heatmap] different distance functions for columns and for rows
Ron Ophir
- [BioC] CDF environment for a custom Affy chip
Oleg Moskvin
- [BioC] Differential expression
Kimpel, Mark William
- [BioC] [heatmap] different distance functions for columns and for rows
Ron Ophir
- [BioC] [heatmap] different distance functions for columns and for rows
Sean Davis
- [BioC] RBGL 1.8.1 installation error on linux
Li.Long at isb-sib.ch
- [BioC] CDF environment for a custom Affy chip
Oleg Moskvin
- [BioC] CDF environment for a custom Affy chip
Seth Falcon
- [BioC] limma decideTests
Georg Otto
Last message date:
Wed May 31 20:47:50 CEST 2006
Archived on: Fri Jun 2 23:43:54 CEST 2006
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