[BioC] GOstats and GenePix arrays

[rgentlem]

Hi,

Jake wrote:
> Sean answered my question.  By "similar function" I meant a function
> that was platform agnostic, as opposed to GOHyperG which assumes
> Affymetrix data.  Really I'm not even writing a function, but just using

  It absolutely does not!

Robert

> the phyper function as part of a workflow in the place of GOHyperG.
> 
> --Jake
> 
> 
> 
> On Thu, 2006-05-11 at 10:41 -0700, Seth Falcon wrote:
>> Jake <jjmichael at comcast.net> writes:
>>
>>> Hi all,
>>>
>>> I'm trying to use the "guts" of the GOHyperG function in GOstats as a
>>> basis for a similar function for GenePix data.  I've found a basic
>>> description of the phyper function in the context of GO:
>> I recently refactored the guts of GOHyperG and the guts are in the
>> Category package.  So it may help to review what is there.
>>
>>
>> I'm not sure I understand what you mean w.r.t a similar func for
>> GenePix data... 
>>
>> + seth
>>
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-- 
Robert Gentleman, PhD
Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M2-B876
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rgentlem at fhcrc.org