[BioC] problem with moe430a version 1.12.0?
Maria Stalteri
m.stalteri at mail.cryst.bbk.ac.uk
Sat May 6 12:24:26 CEST 2006
Hi,
Is there a problem with the latest release of the moe430a
annotation package or am I having problems installing it
on my computer?
I am running R2.3 on Mac OSX. I downloaded the source file
for the latest version of the moe430a (moe430a_1.12.0.tar.gz)
and tried to install it from the R menu.
When I do library(moe430a), and moe430a(), I get the
following output, which shows that something is not quite right.
> library(moe430a)
> moe430a()
Quality control information for moe430a
Date built: Created: Sun Mar 26 00:22:20 2006
Number of probes: 22690
Probe number missmatch: moe430aACCNUM; moe430aCHRLOC; moe430aCHR;
moe430aENZYME; moe430aGENENAME; moe430aGO; moe430aLOCUSID; moe430aMAP;
moe430aPATH; moe430aPMID; moe430aREFSEQ; moe430aSUMFUNC; moe430aSYMBOL;
moe430aUNIGENE
Probe missmatch: None
Mappings found for probe based rda files:
moe430aACCNUM found 14445 of 22690
moe430aCHRLOC found 13770 of 22690
moe430aCHR found 14345 of 22690
moe430aENZYME found 1933 of 22690
moe430aGENENAME found 14337 of 22690
moe430aGO found 13003 of 22690
moe430aLOCUSID found 14369 of 22690
moe430aMAP found 13920 of 22690
moe430aPATH found 4186 of 22690
moe430aPMID found 14317 of 22690
moe430aREFSEQ found 14174 of 22690
moe430aSUMFUNC found 0 of 22690
moe430aSYMBOL found 14350 of 22690
moe430aUNIGENE found 14310 of 22690
Mappings found for non-probe based rda files:
moe430aCHRLENGTHS found 21
moe430aENZYME2PROBE found 616
moe430aGO2ALLPROBES found 5819
moe430aGO2PROBE found 4164
moe430aORGANISM found 1
moe430aPATH2PROBE found 171
moe430aPFAM found 12135
moe430aPMID2PROBE found 75318
moe430aPROSITE found 8922
I also downloaded and installed the 1.12.0 versions of moe430b,
rae230a, rae230b, hgu133a and hgu133plus2, and those all
seemed to work fine on my computer.
Regards,
Maria
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