[BioC] problem with moe430a version 1.12.0?

Maria Stalteri m.stalteri at mail.cryst.bbk.ac.uk
Sat May 6 12:24:26 CEST 2006


Hi,

Is there a problem with the latest release of the moe430a
annotation package or am I having problems installing it
on my computer?

I am running R2.3 on Mac OSX. I downloaded the source file 
for the latest version of the moe430a (moe430a_1.12.0.tar.gz)
and tried to install it from the R menu.

When I do library(moe430a), and moe430a(), I get the
following output, which shows that something is not quite right.

> library(moe430a)
> moe430a()


Quality control information for  moe430a 
Date built: Created: Sun Mar 26 00:22:20 2006  
 
Number of probes: 22690 
Probe number missmatch: moe430aACCNUM; moe430aCHRLOC; moe430aCHR; 
moe430aENZYME; moe430aGENENAME; moe430aGO; moe430aLOCUSID; moe430aMAP; 
moe430aPATH; moe430aPMID; moe430aREFSEQ; moe430aSUMFUNC; moe430aSYMBOL; 
moe430aUNIGENE 
Probe missmatch: None 
Mappings found for probe based rda files: 
	 moe430aACCNUM found 14445 of 22690
	 moe430aCHRLOC found 13770 of 22690
	 moe430aCHR found 14345 of 22690
	 moe430aENZYME found 1933 of 22690
	 moe430aGENENAME found 14337 of 22690
	 moe430aGO found 13003 of 22690
	 moe430aLOCUSID found 14369 of 22690
	 moe430aMAP found 13920 of 22690
	 moe430aPATH found 4186 of 22690
	 moe430aPMID found 14317 of 22690
	 moe430aREFSEQ found 14174 of 22690
	 moe430aSUMFUNC found 0 of 22690
	 moe430aSYMBOL found 14350 of 22690
	 moe430aUNIGENE found 14310 of 22690 
Mappings found for non-probe based rda files:
 	 moe430aCHRLENGTHS found 21
	 moe430aENZYME2PROBE found 616
	 moe430aGO2ALLPROBES found 5819
	 moe430aGO2PROBE found 4164
	 moe430aORGANISM found 1
	 moe430aPATH2PROBE found 171
	 moe430aPFAM found 12135
	 moe430aPMID2PROBE found 75318
	 moe430aPROSITE found 8922 



I also downloaded and installed the 1.12.0 versions of moe430b,
rae230a, rae230b, hgu133a and hgu133plus2, and those all 
seemed to work fine on my computer.

Regards,
Maria



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