[BioC] problem with GOLOCUSID2GO environment in the GO library

[James W. MacDonald]

Mattia Pelizzola wrote:
> Hi, 
> 
> I have found something strange in one environment of the GO library:
> 
>>library(GO)
>>class(GOLOCUSID2GO)
> 
> Error: recursive default argument reference

I wonder if you just need to re-install GO? I don't have any problems 
with this package:

 > class(GOLOCUSID2GO)
[1] "environment"
 > sessionInfo()
R version 2.4.0 Under development (unstable) (2006-05-01 r37954)
x86_64-unknown-linux-gnu

attached base packages:
[1] "tcltk"     "tools"     "methods"   "stats"     "graphics"  "grDevices"
[7] "utils"     "datasets"  "base"

other attached packages:
              GO
        "1.12.0"
 >

Best,

Jim



> 
> ..indeed I'm not able to get any GO term from EntreGene ids.
> I think it should return:
> 
>>class(GOLOCUSID)
> 
> [1] "environment"
> 
> 
> 
>>sessionInfo()
> 
> Version 2.3.0 (2006-04-24)
> x86_64-unknown-linux-gnu
> 
> attached base packages:
> [1] "methods"   "stats"     "graphics"  "grDevices" "utils"     "datasets"
> [7] "base"
> 
> other attached packages:
>       GO
> "1.12.0"
> 
> 
> thanks
> 
> 


-- 
James W. MacDonald, M.S.
Biostatistician
Affymetrix and cDNA Microarray Core
University of Michigan Cancer Center
1500 E. Medical Center Drive
7410 CCGC
Ann Arbor MI 48109
734-647-5623


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