[BioC] Newbie 'rflowcyt' question; problem loading facscan256.fcs
Nolwenn LeMeur
nlemeur at fhcrc.org
Thu May 25 01:09:45 CEST 2006
Hi Ulrik,
I am not sure what is the error. I've tried and it works fine for me.
Which function give you that error? read.FCS?
Have you tried to set the MY.DEBUG parameter to TRUE?
Nolwenn
**************************************
Nolwenn Le Meur, PhD
Fred Hutchinson Cancer Research Center
Computational Biology
1100 Fairview Ave. N., M2-B876
P.O. Box 19024
Seattle, WA 98109-1024
On Wed, 24 May 2006, Ulrik Stervbo wrote:
> Hi all,
>
> I am all new to R and rflowcyt; I've googled and searched looked
> through recent mailinglist archives, but to no avail...
>
> I am trying to load the facscan256.fcs, as described on page 5 (yes 5)
> of 'Using RFlowCyt' from 3 April, 2006. I am stuck with this error:
> Error in if (my.metadata.Text.verbose[last] != my.metadata.delimiter) { :
> missing value where TRUE/FALSE needed
>
> I have no idea what I am doing wrong - I installed the packages with
> getBioC(c("rflowcyt")) (as root). It looked like the packages which
> rflowcyt depends on were also installed.
>
> > sessionInfo()
> Version 2.3.0 (2006-04-24)
> i686-pc-linux-gnu
>
> attached base packages:
> [1] "tools" "grid" "splines" "methods" "stats" "graphics"
> [7] "grDevices" "utils" "datasets" "base"
>
> other attached packages:
> Biobase rflowcyt locfit akima fields rfcdmin hexbin
> "1.10.0" "1.4.0" "1.5-3" "0.5-1" "2.3" "1.4.0" "1.6.0"
> colorspace lattice splancs sp MASS KernSmooth xtable
> "0.9" "0.13-8" "2.01-17" "0.8-14" "7.2-27" "2.22-17" "1.3-2"
> survival
> "2.24"
>
> Btw. Biobase was not loaded with > library(rflowcyt) (or require(rflowcyt)).
>
> The problem is probably very FAQ, I just can't find the answer.
>
> Thanks in advance for any help
> Ulrik
>
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