[BioC] search archives and annnotate questions

[James W. MacDonald]

Kimpel, Mark William wrote:
> Thanks Jim. Would it be appropriate to put this link on the BioC
> homepage?

It is. Click on 'Join mailing list' on the left hand of the home page, 
and then the 'Searchable mail archives' link at the bottom.

OK, technically not the home page, but one link off of it ;-D.

Best,

Jim


> 
> Mark
> 
> Mark W. Kimpel MD 
> 
>  
> 
> (317) 490-5129 Home, Work, & Mobile
> 
> 1-(317)-536-2730 FAX
> 
> -----Original Message-----
> From: James W. MacDonald [mailto:jmacdon at med.umich.edu] 
> Sent: Monday, May 08, 2006 12:05 PM
> To: Kimpel, Mark William
> Cc: Bioconductor Newsgroup
> Subject: Re: [BioC] search archives and annnotate questions
> 
> Kimpel, Mark William wrote:
> 
>>Why is it that so many probesets are annotated with respect to
>>chromosome and cytoband, but not to "chromosome location" in the
>>annotation packages? I recently performed an analysis using rat2302
>>(ver.1.12.0) and passed the results on to a colleague, who
>>subsequently told me that he has found locations for quite a few of
>>the probesets with location "zero" at the Affy website.
>>
>>I tried to see if this question has been addressed before but ran
>>into the following problems: 1. the search button on the Bioconductor
>>homepage is not working (Firefox 1.5.1). 2. the searchable archives
>>site I used to use has been shut down
>>(http://files.protsuggest.org/cgi-bin/biocond.cgi). 3. I am not sure
>>how to Goggle just the BioC archives
>>(https://stat.ethz.ch/pipermail/bioconductor/).
> 
> 
> Search functionality is now provided via gmane.
> 
> http://dir.gmane.org/gmane.science.biology.informatics.conductor
> 
> Best,
> 
> Jim
> 
> 
> 
>>Help in these areas would be appreciated.
>>
>>Thanks,
>>
>>Mark W. Kimpel MD
>>
>>
>>Official Business Address:
>>
>>Department of Psychiatry Indiana University School of Medicine 
>>Biotechnology, Research, & Training Center 1345 W. 16th Street 
>>Indianapolis, IN  46202
>>
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>>
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>>
>>(317) 490-5129 Home, Work, & Mobile 1-(317)-536-2730 FAX
>>
>>_______________________________________________ Bioconductor mailing
>>list Bioconductor at stat.math.ethz.ch 
>>https://stat.ethz.ch/mailman/listinfo/bioconductor Search the
>>archives:
>>http://news.gmane.org/gmane.science.biology.informatics.conductor
> 
> 
> 


-- 
James W. MacDonald, M.S.
Biostatistician
Affymetrix and cDNA Microarray Core
University of Michigan Cancer Center
1500 E. Medical Center Drive
7410 CCGC
Ann Arbor MI 48109
734-647-5623


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