December 2008 Archives by thread
Starting: Mon Dec 1 06:37:39 CET 2008
Ending: Tue Dec 30 22:36:57 CET 2008
Messages: 351
- [BioC] Illumina annotation packages discrepancy
Pan Du
- [BioC] Custom CDF files
Edward Oakeley
- [BioC] FW: Request for the assistance to use MEDME
Prashantha Hebbar Kiradi [MU-MLSC]
- [BioC] Prokaryotic_Rhodobacter capsulatus GEP
James W. MacDonald
- [BioC] CGH analysis in non-model organism
Mingkwan Nipitwattanaphon
- [BioC] Biomart mysql error...
Jesper Ryge
- [BioC] Moderated?
Marc Carlson
- [BioC] tilingArray problems
Wolfgang Huber
- [BioC] BioC 2.3 standard installation
Tiandao Li
- [BioC] Votes for biocLite "default" group modifications
Patrick Aboyoun
- [BioC] Mouse Gene ST v1 CDF Issues (MoGene10stv1): Failure of affyPLM and pdfInfoBuilder
Peter White
- [BioC] [R] BioC 2.3 standard installation
Hervé Pagès
- [BioC] hyperGTest on KEGG and PFAM with org.XX.eg annotations
Marc Carlson
- [BioC] Loading problem with Rlibstree and microRNA packages on MacOS X 10.4
Steven McKinney
- [BioC] [R] BioC 2.3 standard installation
Hervé Pagès
- [BioC] cDNA raw intensities
santana sarma
- [BioC] Colourful way of visualising differential analysis results
Yannick Wurm
- [BioC] Mouse Gene ST v1 CDF Issues (MoGene10stv1): Failure of affyPLM and pdfInfoBuilder
White, Peter
- [BioC] Detection calls with "beadarray"
Cei Abreu-Goodger
- [BioC] makecdfenv crashes
Skewes,Aaron
- [BioC] limma beginner needs help with matrix design
Agnieszka Zmienko
- [BioC] Affymetrix Array Rat Gene 1.0 ST - some annotation challenges
Alexander C Cambon
- [BioC] biomaRt getSequence through genomic position
steffen at stat.Berkeley.EDU
- [BioC] error with getBM function of biomaRt package
T Joshi
- [BioC] !SPAM: Re: Breakthrough formula for men
Elijah Mathis
- [BioC] !SPAM: Tried vacuum pumps and other advertised methods without success ?
Elisabeth Dugan
- [BioC] !SPAM: Christmas gifft idea!
Earnhardt Tako
- !SPAM: Am Mittwoch wäre es besser
Brigitte
- [BioC] !SPAM: VPXL
Young Reynolds
- [BioC] Illumina annotation packages discrepancy
Lynn Amon
- [BioC] !SPAM: Just awesome service
Breitling Watches
- [BioC] !SPAM: $B!z(B100$B!s3N<B!"%*!<%kL5NA$G$4Mx(B
dshfgkhgl459 at yahoo.it
- [BioC] !SPAM: $B!p%;%l%V(BVIP$B=w at -L5NA>R2p=j!p(B
mayu
- [BioC] !SPAM: Aloha
dcy at bostonsci.com.br
- [BioC] !SPAM: 2 months
Clyde Scruggs
- [BioC] !SPAM: 1 year warranty Rep1icaWatches from $190, BvlgariRo1ex, Channel, LV, IWC, TagHeuer, Cartier epd k5
Pa Denisha
- [BioC] !SPAM: Sale Offer:- ViagraCializ Pills at LowestPrices on net! $1.31/tab, find out more ewlelk 6qu
Anisa Gracie
- [BioC] Cannot Subset Columns in beadarray package, ExpressionSetIllumina Class in R-2.8.0, BioBase 2.2.1, beadarray 1.10.0
Julian Lee
- [BioC] FW: Plate 20081202PD10 in service holding
Yogi Sundaravadanam
- [BioC] biomaRt with multiple databases/datasets?
T Joshi
- [BioC] subsetting lumibatch object by probe ID
Emanuele Marchi
- [BioC] subsetting lumibatch object by probe ID]
Emanuele Marchi
- [BioC] Problem of combine function when combining different numeric types
Pan Du
- [BioC] Help with getBM using EST ids from zebrafish
Ochsner, Scott A
- [BioC] Cannot read in CEL files with XPS
Christopher N Barnes
- [BioC] build BPMAP File
Droit Arnaud
- [BioC] General normalization problem that's *similar* to microarrays.
Alex Bokov
- [BioC] Extracting rows where any column has a non-zero value
Nathan S. Watson-Haigh
- [BioC] Error with beadarray example
Juan Lewinger
- [BioC] biomaRt 3'UTR coordinates
Iain Gallagher
- [BioC] altrenative gene symbols
burak kutlu
- [BioC] limma design question
Jenny Drnevich
- [BioC] xtable links
Tim Smith
- [BioC] Detecting mRNA Expression When Somatic Mutations Have Occurred
Stephen Piccolo
- [BioC] Normalizing data (that is not in microarray "format")
Emmanuel Levy
- [BioC] First Artificial Intelligence Trading Robot Released
Michael Hanson
- [BioC] Detecting mRNA Expression When Somatic Mutations Have
Alicia Oshlack
- [BioC] biomaRt 3'UTR coordinates
Iain Gallagher
- [BioC] mapping gene name to affy id
Ruppert Valentino
- [BioC] Applying bioconductor functions to files in different Windows directories
Ruppert Valentino
- [BioC] filtering or not filtering?
Yisong Zhen
- [BioC] specifications for exonmap database config file?
Joseph Fass
- [BioC] filtering or not filtering?
James MacDonald
- [BioC] Rkeys function from AnnotationDbi returns all Rkeys for a subset
Leon Yee
- [BioC] Job postings
Rafael Irizarry
- [BioC] forward conditional Cox and logistic regression
Katleen De Preter
- [BioC] Microarray PCA/MDS/SVD
Yannick Wurm
- [BioC] Talk & Poster - Final Call - qPCR 2009 Event
qPCR 2009 Event Update
- [BioC] Bimodal Distrinbution
Francesco Mancuso
- [BioC] Error message when fitting linear model to Affy data
Martin McCabe
- [BioC] (no subject)
Lloyds TSB Bank
- [BioC] login attempts
Lloyds TSB Bank
- [BioC] Kegg pathway --> gene network
Anand Gavai
- [BioC] analyze HuEx array using HuGene .cdf file
shirley zhang
- [BioC] screeplot in package pcaMethods fails
Yury Bukhman
- [BioC] sd==0 for some probesets when using gcrma
Dick Beyer
- [BioC] issue with lmFit in limma
Skewes,Aaron
- [BioC] Question about graph package
Florian Hahne
- [BioC] 1st Call for Papers - 2nd International Symposium on Distributed Computing and Artificial Intelligence (DCAI'09)
Nora Muda
- [BioC] Probe IDs VS Probeset IDs in Yeast2 annotation
Omri Yahel
- [BioC] Support vector model?
Celine Carret
- [BioC] Kegg pathway --> gene network
Jitao David Zhang
- [BioC] sequence_3utr_start and sequence_3utr_end
Javier Díez
- [BioC] combineAffyBatch problem
Rifat A Hamoudi
- [BioC] Support vector model?
Celine Carret
- [BioC] Intermediate BioC Course 21-23 Jan 09: Analyzing Microarray and Sequencing Experiments
Patrick Aboyoun
- [BioC] installing xps
Lana Schaffer
- [BioC] Job posting
Niels Richard Hansen
- [BioC] preprocessCore
irene.vicari at epfl.ch
- [BioC] using biomaRt to find all genes with kinase activity (and perhaps a Gene Ontology question too)
Andrew Yee
- [BioC] combineAffyBatch problem
Rifat A Hamoudi
- [BioC] Probe IDs VS Probeset IDs in Yeast2 annotation
James MacDonald
- [BioC] Error in function read.spikein of affycomp
cstrato
- [BioC] help about hybirization data of Illumina BeadArray Genotyping Chip
LiGang
- [BioC] Agilent annotation package 4122a vs 4122f
Klemens Vierlinger
- [BioC] ensembl biomart
Javier Díez
- [BioC] Visualising SOM output as U-matrix in R\Bioconductor
Paul Geeleher
- [BioC] combineAffyBatch problem
Rifat A Hamoudi
- [BioC] combineAffyBatch problem
Hervé Pagès
- [BioC] Illumina annotation problem - illuminaHumanv2GENENAME
McClellan, Elizabeth Ann
- [BioC] RWebServices installation
Bastian Angermann
- [BioC] KEGG.db in GoStats with Streptomyces coelicolor
Legaie, Roxane
- [BioC] two color array vs. one color array
Leon Yee
- [BioC] Dentist.s Listing for the United States
greenware Richards
- [BioC] Questions about Limma package
Priscila Grynberg
- [BioC] Questions about Limma package
James W. MacDonald
- [BioC] Questions about Limma package
Priscila Grynberg
- [BioC] targets frame
Giusy Della Gatta
- [BioC] Error in function read.spikein of affycomp
cstrato
- [BioC] How to retrieve 'conservation score' sequence?
Hooiveld, Guido
- [BioC] RMA error in cdf environment with removed probes (Yeast2)
Omri Yahel
- [BioC] read.maimages in limma package
Giusy Della Gatta
- [BioC] qPCR NEWS - December 2008
qPCR Platform - the reference in real-time PCR
- [BioC] two color array vs. one color array
Naomi Altman
- [BioC] A CGH platform question
Johan Lindberg
- [BioC] Normalized microarray data and meta-analysis
Mcmahon, Kevin
- [BioC] Submit your Music for Major airplay - SoulfulRadioNetwork
SoulfulRadioNetwork
- [BioC] Error in getting MA plot with plotPrintTipLoess command for 244K chip data
Prashantha Hebbar Kiradi [MU-MLSC]
- [BioC] biomaRt difference from biomart.org?
Jorrit Boekel
- [BioC] Processing exon array in bioconductor
Barb, Jennifer (NIH/CIT) [E]
- [BioC] ensembl biomart
steffen at stat.Berkeley.EDU
- [BioC] Interesting cooperation proposal for your website
Jennifer Clarkson
- [BioC] Aroma breaks when reading >2 Agilent 44k custom arrays
Daniel Klevebring
- [BioC] Bioc-devel Digest, Vol 57, Issue 4
rcaloger
- [BioC] use alternative CDF in aroma.affymetrix in linux
shirley zhang
- [BioC] onvert an already existing CDF environment into a CDF file or CDF package
shirley zhang
- [BioC] Talk & Poster - Final Call - qPCR 2009 Event
qPCR 2009 Event Update
- [BioC] Affymetrix Mogene 1 0 ST
Al Ivens
- [BioC] Problems with read.maimages
Priscila Grynberg
- [BioC] use alternative CDF in aroma.affymetrix in linux
Manhong Dai
- [BioC] affy package RMA results difference from R2.5 to R2.8
He, Yiwen (NIH/CIT) [C]
- [BioC] discrepancies using different gcRMA
Wen Huang
- [BioC] Bioconductor Digest, Vol 70, Issue 23
Priscila Grynberg
- [BioC] heatmap.2
Anastasia Gioti
- [BioC] NormalizeWithinArrays
Priscila Grynberg
- [BioC] heatmap.2
Sean Davis
- [BioC] NormalizeWithinArrays
Sean Davis
- [BioC] Affymetrix Mogene 1 0 ST
Maria Stalteri
- [BioC] Does any one know a package that allow command line dChip normalization with a specific median array?
Li, Aiguo (NIH/NCI) [E]
- [BioC] 2009 Courses***R/S-PLUS Advanced & Fundamentals - January 2009. Also check out our New&Emerging Courses.
sue at xlsolutions-corp.com
- [BioC] NormalizationWithinArrays
Priscila Grynberg
- [BioC] Printtiploess error
Priscila Grynberg
- [BioC] Bist Du auch dabei?
Dating Online
- [BioC] backgroundCorrect for RGlist
Harpreet Kaur Saini
- [BioC] Kegg pathway --> gene network
Elliot Kleiman
- [BioC] limma separate channel analysis of two-color data
Dejian Zhao
- [BioC] Unable to load Rgaphviz
anupam sinha
- [BioC] Xiangli added you as a friend on Reunion.com!
Xiangli Zhang
- [BioC] Xiangli added you as a friend on Reunion.com!
Xiangli Zhang
- [BioC] readChp in affxparser
Henrik Bengtsson
Last message date:
Tue Dec 30 22:36:57 CET 2008
Archived on: Tue Dec 30 22:37:11 CET 2008
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