[BioC] use alternative CDF in aroma.affymetrix in linux

Manhong Dai daimh at umich.edu
Mon Dec 22 15:20:47 CET 2008

Dear Shirley,

	Thanks a lot for your interest in our custom CDF, you can go to
http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/CDF_download.asp#v11 and select link 'Click Me' for a custom CDF type, then the last column of the huge table is what you want.


> Date: Sun, 21 Dec 2008 18:02:17 -0500
> From: "shirley zhang" <shirley0818 at gmail.com>
> Subject: [BioC] use alternative CDF in aroma.affymetrix in linux
> To: "Bioconductor Mailing List" <bioconductor at stat.math.ethz.ch>
> Message-ID:
> 	<6fb73d020812211502k74245d0aj991b50931f7c59c5 at mail.gmail.com>
> Content-Type: text/plain; charset=ISO-8859-1
> Dear list,
> After I downloaded the entrezg.cdf from MNBI website
> (huex10stv2hsentrezgcdf_11.0.1.tar.gz.gz), I unzipped it. However, I
> could not find .CDF file to be used in aroma.affymetrix. The only
> similar file I found is called "huex10stv2hsentrezgcdf.rda" in data
> folder. Can you tell me how to use this entrezfcdf in
> aroma.affymetrix?
> Thanks,
> Shirley

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