[BioC] limma separate channel analysis of two-color data

[Dejian Zhao]

Hi everyone,

I am carrying out separate channel analysis of two-color data in limma. 
I find that I can not merge the duplicate spots on the arrays. The  
function  lmscFit()  does  not  provide  an argument "ndups" to deal 
with the duplicate spots on the arrays as lmFit() does. Therefore there 
are many duplicate spots in the DE genes. I wonder whether there is a 
way to merge the duplicate spots.
Thanks

Dejian