[BioC] error with getBM function of biomaRt package
T Joshi
tejalonline at gmail.com
Wed Dec 3 11:02:21 CET 2008
Hi,
I was running the example in getBM and got the following error:
getBM(attributes=c("affy_hg_u95av2","hgnc_symbol","chromosome_name","band"),filters="affy_hg_u95av2",values=c("1939_at","1503_at","1454_at"),
mart=mart)
Error in getBM(attributes = c("affy_hg_u95av2", "hgnc_symbol",
"chromosome_name", :
could not find function "postForm"
Here is the sessionInfo:
> sessionInfo()
R version 2.7.1 (2008-06-23)
ia64-unknown-linux-gnu
attached base packages:
[1] splines tools stats graphics grDevices utils datasets
[8] methods base
other attached packages:
[1] GOstats_2.6.0 Category_2.6.0 genefilter_1.20.1
[4] survival_2.34-1 RBGL_1.18.0 annotate_1.18.0
[7] xtable_1.5-4 GO.db_2.2.0 AnnotationDbi_1.2.2
[10] RSQLite_0.6-9 DBI_0.2-4 Biobase_2.0.1
[13] graph_1.18.1 biomaRt_1.14.1 RCurl_0.0.666
loaded via a namespace (and not attached):
[1] cluster_1.11.11 tcltk_2.7.1 XML_1.96-0
I also tried with some other data, but it doesn't seem to work anyway.
I have attached the output of debug to this mail. Please let me know
what's happening here.
regards,
Josh
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