[BioC] Loading problem with Rlibstree and microRNA packages on MacOS X 10.4
Steven McKinney
smckinney at bccrc.ca
Tue Dec 2 01:32:20 CET 2008
Hi Duncan,
I thought Rlibstree might not be maintained as
the README states "This is a quickly written
interface... ", has no vignette or pdf,
and references an older version of libstree
"libstree-0.4.0.tar.gz"
so it wasn't clear when this package
was last touched.
My apologies for that judgment.
Thanks for your information on patching
the libstree header file. After adding
the requisite lines, I can configure
and make libstree-0.4.3
I then installed Rlibstree from binaries,
but when I try to load it I get this error
message
> require("Rlibstree")
Loading required package: Rlibstree
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared library '/Library/Frameworks/R.framework/Resources/library/Rlibstree/libs/ppc/Rlibstree.so':
dlopen(/Library/Frameworks/R.framework/Resources/library/Rlibstree/libs/ppc/Rlibstree.so, 6): Symbol not found: _lst_alg_longest_common_substring
Referenced from: /Library/Frameworks/R.framework/Resources/library/Rlibstree/libs/ppc/Rlibstree.so
Expected in: dynamic lookup
> sessionInfo()
R version 2.8.0 Patched (2008-11-06 r46845)
powerpc-apple-darwin9.5.0
locale:
en_CA.UTF-8/en_CA.UTF-8/C/C/en_CA.UTF-8/en_CA.UTF-8
attached base packages:
[1] splines tools stats graphics grDevices utils datasets methods base
other attached packages:
[1] fortunes_1.3-5 matchprobes_1.14.0 affy_1.20.0 org.Hs.eg.db_2.2.6 humanStemCell_0.2.0
[6] hgu133plus2.db_2.2.5 RSQLite_0.7-1 DBI_0.2-4 AnnotationDbi_1.4.1 limma_2.16.3
[11] genefilter_1.22.0 survival_2.34-1 rtracklayer_1.2.2 RCurl_0.92-0 Biobase_2.2.1
loaded via a namespace (and not attached):
[1] Biostrings_2.10.8 IRanges_1.0.5 Matrix_0.999375-16 XML_1.98-1 affyio_1.10.1
[6] annotate_1.20.1 grid_2.8.0 lattice_0.17-15 preprocessCore_1.4.0 rJava_0.6-0
Does this bit of the error message suggest what
the problem might be?
"Symbol not found: _lst_alg_longest_common_substring"
I then tried installing from source, but during the
installation, libstree is recompiled from the local
version included with the Rlibstree source. I
had to specify a flag "CC=gcc-4.2" in my manual
compilation, but haven't yet figured out how to
specify this when installing Rlibstree from source.
So installing from source has not yet been successful either.
(Output from R.app GUI window of install is included at
end of email).
Any further guidance appreciated.
Best
Steven McKinney
Statistician
Molecular Oncology and Breast Cancer Program
British Columbia Cancer Research Centre
email: smckinney +at+ bccrc +dot+ ca
tel: 604-675-8000 x7561
BCCRC
Molecular Oncology
675 West 10th Ave, Floor 4
Vancouver B.C.
V5Z 1L3
Canada
-----Original Message-----
From: Luo Weijun [mailto:luo_weijun at yahoo.com]
Sent: Sat 11/29/2008 6:11 PM
To: Duncan Temple Lang
Cc: bioconductor at stat.math.ethz.ch; Steven McKinney
Subject: Re: [BioC] Loading problem with Rlibstree and microRNA packages on MacOS X 10.4
Thanks, Duncan, for your timely response,
I modified the source codes for both libstree-0.4.2/src/lst_string.h and libstree-0.4.3/src/lst_string.h following your suggestion, and reinstall Rlibstree from source. This really made difference. The chunk of warning message on R_newStringSet and R_stringSetAdd functions (in stree.c file) has gone. However, the following error message still showed (below). Any ideas/suggestions? Thanks a lot!
Weijun
Building Rlibstree
** libs
** arch - ppc
gcc -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o Rlibstree.so prefix.o stree.o -L../local/lib -lstree -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
/usr/bin/libtool: for architecture cputype (16777223) cpusubtype (3) object: /usr/local/lib/libgcc_s.10.4.dylib malformed object (unknown load command 4)
make: *** [Rlibstree.so] Error 1
chmod: /Library/Frameworks/R.framework/Versions/2.8/Resources/library/Rlibstree/libs/ppc/*: No such file or directory
ERROR: compilation failed for package 'Rlibstree'
** Removing '/Library/Frameworks/R.framework/Versions/2.8/Resources/library/Rlibstree'
** Restoring previous '/Library/Frameworks/R.framework/Versions/2.8/Resources/library/Rlibstree'
Warning message:
In install.packages("~/download/R/packages/Rlibstree", repos = NULL, :
installation of package '/Users/luow/download/R/packages/Rlibstree' had non-zero exit status
--- On Sat, 11/29/08, Duncan Temple Lang <duncan at wald.ucdavis.edu> wrote:
> From: Duncan Temple Lang <duncan at wald.ucdavis.edu>
> Subject: Re: [BioC] Loading problem with Rlibstree and microRNA packages on MacOS X 10.4
> To: luo_weijun at yahoo.com
> Cc: bioconductor at stat.math.ethz.ch, "Steven McKinney" <smckinney at bccrc.ca>
> Date: Saturday, November 29, 2008, 3:44 PM
> Hi Weijun
>
> Thanks for informing me about the problem.
>
> I haven't looked at the problem you got when loading
> the package, but
> rather the problem with compiling.
>
> Firstly, I would let Rlibstree build its own version of
> libstree-0.4.2 (or 0.4-3) rather than building it yourself.
> But either will work
> after the libstree source is corrected.
>
> The error when building libstree from either source is the
> lack of
> a definition for u_char or u_int. This is typically
> defined by
> the system, but not anymore on OS X. So we just need to
> define it.
>
> If you add
>
> typedef unsigned char u_char;
> typedef unsigned int u_int;
>
> to the file libstree-0.4.2/src/lst_string.h
> just before the definition
>
> struct lst_string
>
> Then things should work. They do on my systems.
>
> I'll add something to the source to check for this
> and define the types if they are not already defined.
> It won't happen in the next 2 weeks however.
>
>
> As for Rlibstree not being maintained.....
> Not certain why Steven came to that conclusion, but
> just because things aren't updated doesn't mean
> they aren't
> maintained - just that they don't need to be changed!
>
> D.
>
>
>
> Luo Weijun wrote:
> > Thanks Steven, for all the information,
> > Based on the README of Rlibstree in your message, I
> tried installed libstree-0.4.2 first, then reinstalled
> Rlibstree using: R CMD INSTALL
> --configure-args=--with-libstree=$HOME/local Rlibstree
> either from binaries or source. I still got the same loading
> error messages (and the same errors when installing
> Rlibstree from source). Different from what you have seen,
> configure and make install steps for libstree on my machine
> seemed to be okay. To me, the problem is more likely
> occurring at Rlibstree configuration and installation level.
> However, the authors of the rtracklayer package and microRNA
> package seemed to have no problem in loading Rlibstree
> package because both packages have gone through the checking
> process. Not sure what platform(s) have been checked when
> these packages were built.
> > Weijun
> >
> >
> >
> > --- On Fri, 11/28/08, Steven McKinney
> <smckinney at bccrc.ca> wrote:
> >
> >> From: Steven McKinney <smckinney at bccrc.ca>
> >> Subject: RE: [BioC] Loading problem with Rlibstree
> and microRNA packages on MacOS X 10.4
> >> To: luo_weijun at yahoo.com,
> bioconductor at stat.math.ethz.ch
> >> Date: Friday, November 28, 2008, 3:14 PM
> >> Dear Luo,
> >>
> >> The README file in the Rlibstree source directory
> >> discusses installing the software
> 'libstree'.
> >>
> >> I downloaded libstree from
> http://www.icir.org/christian/libstree/
> >> and attempted to configure and make, but libstree
> >> would not make.
> >>
> >> bash-3.2$ make
> >> make all-recursive
> >> Making all in src
> >> if /bin/sh ../libtool --mode=compile --tag=CC
> gcc-4.2
> >> -DHAVE_CONFIG_H -I. -I. -I.. -I.. -W -Wall -g
> -O2 -MT
> >> lst_stree.lo -MD -MP -MF
> ".deps/lst_stree.Tpo" -c
> >> -o lst_stree.lo lst_stree.c; \
> >> then mv -f ".deps/lst_stree.Tpo"
> >> ".deps/lst_stree.Plo"; else rm -f
> >> ".deps/lst_stree.Tpo"; exit 1; fi
> >> gcc-4.2 -DHAVE_CONFIG_H -I. -I. -I.. -I.. -W
> -Wall -g -O2
> >> -MT lst_stree.lo -MD -MP -MF .deps/lst_stree.Tpo
> -c
> >> lst_stree.c -fno-common -DPIC -o
> .libs/lst_stree.o
> >> In file included from lst_structs.h:29,
> >> from lst_stree.h:34,
> >> from lst_stree.c:34:
> >> lst_string.h:101: error: expected
> specifier-qualifier-list
> >> before 'u_char'
> >> lst_string.h:130: error: expected
> specifier-qualifier-list
> >> before 'u_int'
> >> lst_string.h:165: error: expected declaration
> specifiers or
> >> '...' before 'u_int'
> >> lst_string.h:165: error: expected declaration
> specifiers or
> >> '...' before 'u_int'
> >> lst_string.h:180: error: expected declaration
> specifiers or
> >> '...' before 'u_int'
> >> .
> >> .
> >> .
> >>
> >> Doesn't look promising.
> >> The DESCRIPTION of Rlibstree lists Duncan Temple
> Lang
> >> as the maintainer (though the date is Oct 2007)
> >> Maintainer: Duncan Temple Lang
> >> <duncan at wald.ucdavis.edu>
> >> so you could contact Duncan and see if he is still
> >> maintaining
> >> this package.
> >>
> >> The README from libstree states:
> >> Given that LibSTree is a self-contained library,
> it should
> >> build on
> >> any major OS out there or at least be easy to
> port.
> >> Reported to work:
> >>
> >> - Linux
> >> - OpenBSD
> >>
> >>
> >> Requirements:
> >> =============
> >>
> >> * none, other than gcc or some other compiler.
> >>
> >> The last date on the libstree website is Sept 2007
> and
> >> Christian Kreibich states "it is increasingly
> hard for me to find time to work
> >> on libstree"
> >>
> >>
> >>
> >> README from Rlibstree:
> >> -----------------------
> >> This is a quickly written interface to a suffix
> tree
> >> library to
> >> explore different aspects of external data and
> the use of
> >> suffix trees
> >> in R for text manipulation. Currently, we use
> the
> >> libstree
> >> (http://www.cl.cam.ac.uk/~cpk25/libstree/,
> Download from
> >>
> >>
> http://www.cl.cam.ac.uk/~cpk25/downloads/libstree-0.4.0.tar.gz
> >> or more recently from
> >> http://www.icir.org/christian/libstree/) source
> >> code by Christian Kreibich. Installation of that
> library
> >> is relatively
> >> straighforward as it is stand-alone, not
> depending on
> >> other libraries.
> >> Unfortunately, to use it easily with another
> program, the
> >> libstree
> >> code should be installed. To put it someplace
> for which
> >> you do not
> >> need special permissions, use
> >>
> >> cd libstree-0.4-0 # or whatever the
> relevant
> >> directory is.
> >> ./configure --prefix=$HOME/local
> >> make install
> >> Then use
> >>
> >> R CMD INSTALL
> >> --configure-args=--with-libstree=$HOME/local
> Rlibstree
> >> and that should find the relevant header and
> libaries
> >> files. Specifically, the argument for --prefix
> when building and
> >> installing libstree
> >> should be the same as the value for
> --with-libstree in the
> >> R CMD INSTALL.
> >>
> >>
> >>
> >> I think Rlibstree has not been maintained for a
> while
> >> and its various parts are no longer working.
> >>
> >> You might also need to contact the maintainer of
> the package that requires Rlibstree and let them
> >> know of this problem.
> >>
> >>
> >> Best
> >>
> >> Steven McKinney
> >>
> >> Statistician
> >> Molecular Oncology and Breast Cancer Program
> >> British Columbia Cancer Research Centre
> >>
> >> email: smckinney +at+ bccrc +dot+ ca
> >>
> >> tel: 604-675-8000 x7561
> >>
> >> BCCRC
> >> Molecular Oncology
> >> 675 West 10th Ave, Floor 4
> >> Vancouver B.C. V5Z 1L3
> >> Canada
> >>
> >>
> >>
> >>
> >> -----Original Message-----
> >> From: bioconductor-bounces at stat.math.ethz.ch on
> behalf of
> >> Luo Weijun
> >> Sent: Fri 11/28/2008 9:44 AM
> >> To: bioconductor at stat.math.ethz.ch
> >> Subject: [BioC] Loading problem with Rlibstree and
> microRNA
> >> packages on MacOS X 10.4
> >> Dear all,
> >> I called microRNA package when I tried rtracklayer
> package
> >> on a Mac OS X 10.4 machine. Errors produced when
> loading the
> >> depended package Rlibstree (see below).
> >> I tried installed Rlibstree alone from binaries or
> source,
> >> both failed. Error messages (see below). suggested
> that
> >> R_newStringSet and R_stringSetAdd functions (in
> stree.c
> >> file) had problem when passing argument 1 of
> >> 'lst_string_new'. This seems to be
> consistent with
> >> the loading error message, but I am not sure what
> does it
> >> mean. Could anybody help or give any hints. Thanks
> a lot!
> >> Weijun
> >>
> >> #Loading error
> >> Loading required package: Rlibstree
> >> Error in dyn.load(file, DLLpath = DLLpath, ...) :
> unable to load shared library
> >>
> '/Library/Frameworks/R.framework/Resources/library/Rlibstree/libs/ppc/Rlibstree.so':
> >>
> dlopen(/Library/Frameworks/R.framework/Resources/library/Rlibstree/libs/ppc/Rlibstree.so,
> >> 6): Symbol not found:
> _lst_alg_longest_common_substring
> >> Referenced from:
> >>
> /Library/Frameworks/R.framework/Resources/library/Rlibstree/libs/ppc/Rlibstree.so
> >> Expected in: dynamic lookup
> >>
> >> Error: package 'Rlibstree' could not be
> loaded
> >>> sessionInfo()
> >> R version 2.8.0 (2008-10-20)
> powerpc-apple-darwin8.11.1
> >> locale:
> >> C
> >>
> >> attached base packages:
> >> [1] tools stats graphics grDevices utils
> datasets methods [8] base
> >> other attached packages:
> >> [1] matchprobes_1.14.0 affy_1.20.0
> Biobase_2.2.1
> >>
> >> loaded via a namespace (and not attached):
> >> [1] affyio_1.10.1 preprocessCore_1.4.0
> >>
> >> Installing error (from source)
> >> .
> >> gcc -arch ppc -std=gnu99
> >>
> -I/Library/Frameworks/R.framework/Resources/include
> >>
> -I/Library/Frameworks/R.framework/Resources/include/ppc
> >> -I../local/include/ -I/usr/local/include -fPIC
> -g -O2 -c
> >> prefix.c -o prefix.o
> >> gcc -arch ppc -std=gnu99
> >>
> -I/Library/Frameworks/R.framework/Resources/include
> >>
> -I/Library/Frameworks/R.framework/Resources/include/ppc
> >> -I../local/include/ -I/usr/local/include -fPIC
> -g -O2 -c
> >> stree.c -o stree.o
> >> stree.c: In function 'R_newStringSet':
> >> stree.c:100: warning: passing argument 1 of
> >> 'lst_string_new' discards qualifiers from
> pointer
> >> target type
> >> stree.c: In function 'R_stringSetAdd':
> >> stree.c:316: warning: passing argument 1 of
> >> 'lst_string_new' discards qualifiers from
> pointer
> >> target type
> >> gcc -arch ppc -std=gnu99 -dynamiclib
> >> -Wl,-headerpad_max_install_names
> -mmacosx-version-min=10.4
> >> -undefined dynamic_lookup -single_module
> -multiply_defined
> >> suppress -L/usr/local/lib -o Rlibstree.so prefix.o
> stree.o
> >> -L../local/lib -lstree
> -F/Library/Frameworks/R.framework/..
> >> -framework R -Wl,-framework -Wl,CoreFoundation
> >> /usr/bin/libtool: for architecture cputype
> (16777223)
> >> cpusubtype (3) object:
> /usr/local/lib/libgcc_s.10.4.dylib
> >> malformed object (unknown load command 4)
> >> make: *** [Rlibstree.so] Error 1
> >> chmod:
> >>
> /Library/Frameworks/R.framework/Versions/2.8/Resources/library/Rlibstree/libs/ppc/*:
> >> No such file or directory
> >> ERROR: compilation failed for package
> 'Rlibstree'
> >> ** Removing
> >>
> '/Library/Frameworks/R.framework/Versions/2.8/Resources/library/Rlibstree'
> >> ** Restoring previous
> >>
> '/Library/Frameworks/R.framework/Versions/2.8/Resources/library/Rlibstree'
> >>
> >>
> >>
> >>
> >>
> >> _______________________________________________
> >> Bioconductor mailing list
> >> Bioconductor at stat.math.ethz.ch
> >> https://stat.ethz.ch/mailman/listinfo/bioconductor
> >> Search the archives:
> >>
> http://news.gmane.org/gmane.science.biology.informatics.conductor
> >
> > _______________________________________________
> > Bioconductor mailing list
> > Bioconductor at stat.math.ethz.ch
> > https://stat.ethz.ch/mailman/listinfo/bioconductor
> > Search the archives:
> http://news.gmane.org/gmane.science.biology.informatics.conductor
* Installing *source* package 'Rlibstree' ...
Using version 0.4.2 of libstree source included with this R package
Need to compile the source. This may take a few moments.
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... awk
checking whether make sets $(MAKE)... yes
shtool:echo:Warning: unable to determine terminal sequence for bold mode
shtool:echo:Warning: unable to determine terminal sequence for bold mode
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking for style of include used by make... GNU
checking dependency style of gcc... gcc3
checking whether make sets $(MAKE)... (cached) yes
checking build system type... powerpc-apple-darwin9.5.0
checking host system type... powerpc-apple-darwin9.5.0
checking for a sed that does not truncate output... /usr/bin/sed
checking for egrep... grep -E
checking for ld used by gcc... /usr/libexec/gcc/powerpc-apple-darwin9/4.0.1/ld
checking if the linker (/usr/libexec/gcc/powerpc-apple-darwin9/4.0.1/ld) is GNU ld... no
checking for /usr/libexec/gcc/powerpc-apple-darwin9/4.0.1/ld option to reload object files... -r
checking for BSD-compatible nm... /usr/bin/nm -p
checking whether ln -s works... yes
checking how to recognise dependent libraries... pass_all
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
rm: conftest.dSYM: is a directory
checking dependency style of g++... gcc3
checking how to run the C++ preprocessor... g++ -E
checking for g77... no
checking for f77... no
checking for xlf... no
checking for frt... no
checking for pgf77... no
checking for fort77... no
checking for fl32... no
checking for af77... no
checking for f90... no
checking for xlf90... no
checking for pgf90... no
checking for epcf90... no
checking for f95... no
checking for fort... no
checking for xlf95... no
checking for ifc... no
checking for efc... no
checking for pgf95... no
checking for lf95... no
checking for gfortran... gfortran
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
checking the maximum length of command line arguments... 65536
checking command to parse /usr/bin/nm -p output from gcc object... rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
ok
checking for objdir... .libs
checking for ar... ar
checking for ranlib... ranlib
checking for strip... strip
checking if gcc static flag works... rm: conftest.dSYM: is a directory
yes
checking if gcc supports -fno-rtti -fno-exceptions... rm: conftest.dSYM: is a directory
no
checking for gcc option to produce PIC... -fno-common
checking if gcc PIC flag -fno-common works... rm: yes
checking if gcc supports -c -o file.o... conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
yes
checking whether the gcc linker (/usr/libexec/gcc/powerpc-apple-darwin9/4.0.1/ld) supports shared libraries... yes
checking dynamic linker characteristics... darwin9.5.0 dyld
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
configure: creating libtool
appending configuration tag "CXX" to libtool
checking for ld used by g++... /usr/libexec/gcc/powerpc-apple-darwin9/4.0.1/ld
checking if the linker (/usr/libexec/gcc/powerpc-apple-darwin9/4.0.1/ld) is GNU ld... no
checking whether the g++ linker (/usr/libexec/gcc/powerpc-apple-darwin9/4.0.1/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fno-common
checking if g++ PIC flag -fno-common works... rm: conftest.dSYM: is a directory
yes
checking if g++ supports -c -o file.o... rm: conftest.dSYM: is a directory
yes
checking whether the g++ linker (/usr/libexec/gcc/powerpc-apple-darwin9/4.0.1/ld) supports shared libraries... yes
checking dynamic linker characteristics... darwin9.5.0 dyld
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
appending configuration tag "F77" to libtool
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking for gfortran option to produce PIC... -fno-common
checking if gfortran PIC flag -fno-common works... rm: conftest.dSYM: is a directory
yes
checking if gfortran supports -c -o file.o... rm: yes
checking whether the gfortran linker (/usr/libexec/gcc/powerpc-apple-darwin9/4.0.1/ld) supports shared libraries... conftest.dSYM: is a directory
yes
checking dynamic linker characteristics... darwin9.5.0 dyld
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking for gtkdoc-mkdb... false
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating test/Makefile
config.status: creating docs/Makefile
config.status: creating config.h
config.status: executing depfiles commands
libstree Configuration Summary
====================================================
Setup finished. Now run:
$ make
# make install
(or use gmake when make on your platform isn't GNU make)
make all-recursive
Making all in src
if /bin/sh ../libtool --mode=compile --tag=CC gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -W -Wall -g -O2 -MT lst_stree.lo -MD -MP -MF ".deps/lst_stree.Tpo" -c -o lst_stree.lo lst_stree.c; \
then mv -f ".deps/lst_stree.Tpo" ".deps/lst_stree.Plo"; else rm -f ".deps/lst_stree.Tpo"; exit 1; fi
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -W -Wall -g -O2 -MT lst_stree.lo -MD -MP -MF .deps/lst_stree.Tpo -c lst_stree.c -fno-common -DPIC -o lst_stree.o
In file included from lst_structs.h:29,
from lst_stree.h:34,
from lst_stree.c:34:
lst_string.h:101: error: syntax error before 'u_char'
lst_string.h:101: warning: no semicolon at end of struct or union
lst_string.h:103: warning: type defaults to 'int' in declaration of 'num_items'
lst_string.h:103: warning: data definition has no type or storage class
lst_string.h:104: error: syntax error before 'item_size'
lst_string.h:104: warning: type defaults to 'int' in declaration of 'item_size'
lst_string.h:104: warning: data definition has no type or storage class
lst_string.h:107: error: syntax error before '}' token
lst_string.h:130: error: syntax error before 'u_int'
lst_string.h:130: warning: no semicolon at end of struct or union
lst_string.h:136: warning: type defaults to 'int' in declaration of 'end_index'
lst_string.h:136: warning: data definition has no type or storage class
lst_string.h:137: error: syntax error before 'end_index_local'
lst_string.h:137: warning: type defaults to 'int' in declaration of 'end_index_local'
lst_string.h:137: warning: data definition has no type or storage class
lst_string.h:143: error: syntax error before 'extra_index'
lst_string.h:143: warning: type defaults to 'int' in declaration of 'extra_index'
lst_string.h:143: warning: data definition has no type or storage class
lst_string.h:165: error: syntax error before 'u_int'
lst_string.h:180: error: syntax error before 'u_int'
lst_string.h:217: error: syntax error before 'lst_string_get_length'
lst_string.h:217: warning: type defaults to 'int' in declaration of 'lst_string_get_length'
lst_string.h:217: warning: data definition has no type or storage class
lst_string.h:228: error: syntax error before 'u_int'
lst_string.h:254: error: syntax error before 'u_int'
lst_string.h:271: error: syntax error before 'u_int'
lst_string.h:289: error: syntax error before 'lst_string_items_common'
lst_string.h:289: error: syntax error before 'u_int'
lst_string.h:291: warning: type defaults to 'int' in declaration of 'lst_string_items_common'
lst_string.h:291: warning: data definition has no type or storage class
In file included from lst_stree.h:34,
from lst_stree.c:34:
lst_structs.h:47: error: field 'range' has incomplete type
lst_structs.h:55: error: syntax error before 'u_int'
lst_structs.h:55: warning: no semicolon at end of struct or union
lst_structs.h:67: error: 'index' redeclared as different kind of symbol
lst_structs.h:68: error: syntax error before 'id'
lst_structs.h:68: warning: type defaults to 'int' in declaration of 'id'
lst_structs.h:68: warning: data definition has no type or storage class
lst_structs.h:71: error: syntax error before 'bus_visited'
lst_structs.h:71: warning: type defaults to 'int' in declaration of 'bus_visited'
lst_structs.h:71: warning: data definition has no type or storage class
lst_structs.h:79: error: syntax error before 'u_int'
lst_structs.h:79: warning: no semicolon at end of struct or union
lst_structs.h:96: error: syntax error before 'u_int'
lst_structs.h:96: warning: no semicolon at end of struct or union
lst_structs.h:103: warning: type defaults to 'int' in declaration of 'phase'
lst_structs.h:103: warning: data definition has no type or storage class
lst_structs.h:113: error: syntax error before 'ext'
lst_structs.h:113: warning: type defaults to 'int' in declaration of 'ext'
lst_structs.h:113: warning: data definition has no type or storage class
lst_structs.h:119: error: conflicting types for 'leafs'
lst_structs.h:61: error: previous declaration of 'leafs' was here
lst_structs.h:143: error: syntax error before 'visitors'
lst_structs.h:143: warning: type defaults to 'int' in declaration of 'visitors'
lst_structs.h:143: error: conflicting types for 'visitors'
lst_structs.h:70: error: previous declaration of 'visitors' was here
lst_structs.h:143: warning: data definition has no type or storage class
In file included from lst_stree.c:36:
lst_algorithms.h:107: error: syntax error before 'lst_alg_set_visitors'
lst_algorithms.h:107: warning: type defaults to 'int' in declaration of 'lst_alg_set_visitors'
lst_algorithms.h:107: warning: data definition has no type or storage class
lst_algorithms.h:128: error: syntax error before 'u_int'
lst_algorithms.h:149: error: syntax error before 'u_int'
lst_stree.c:55: error: syntax error before 'u_int'
lst_stree.c:55: warning: no semicolon at end of struct or union
lst_stree.c:57: warning: type defaults to 'int' in declaration of 'LST_PathEnd'
lst_stree.c:57: warning: data definition has no type or storage class
lst_stree.c:64: error: syntax error before 'u_int'
lst_stree.c: In function 'edge_new':
lst_stree.c:76: error: 'src_node' undeclared (first use in this function)
lst_stree.c:76: error: (Each undeclared identifier is reported only once
lst_stree.c:76: error: for each function it appears in.)
lst_stree.c:77: error: 'dst_node' undeclared (first use in this function)
lst_stree.c:79: error: 'string' undeclared (first use in this function)
lst_stree.c:80: error: 'start_index' undeclared (first use in this function)
lst_stree.c: At top level:
lst_stree.c:98: error: syntax error before 'u_int'
lst_stree.c: In function 'edge_leaf_new':
lst_stree.c:100: error: 'src_node' undeclared (first use in this function)
lst_stree.c:100: error: 'dst_node' undeclared (first use in this function)
lst_stree.c:100: error: 'string' undeclared (first use in this function)
lst_stree.c:100: error: 'start_index' undeclared (first use in this function)
lst_stree.c:108: error: 'tree' undeclared (first use in this function)
lst_stree.c: In function 'node_new':
lst_stree.c:129: error: nested functions are disabled, use -fnested-functions to re-enable
lst_stree.c:129: error: syntax error before 'id'
lst_stree.c:132: error: invalid application of 'sizeof' to incomplete type 'LST_Node'
lst_stree.c:140: error: dereferencing pointer to incomplete type
lst_stree.c:141: error: dereferencing pointer to incomplete type
lst_stree.c:142: error: dereferencing pointer to incomplete type
lst_stree.c: In function 'node_free':
lst_stree.c:156: error: dereferencing pointer to incomplete type
lst_stree.c:156: error: dereferencing pointer to incomplete type
lst_stree.c:157: error: dereferencing pointer to incomplete type
lst_stree.c:157: error: dereferencing pointer to incomplete type
lst_stree.c:157: error: dereferencing pointer to incomplete type
lst_stree.c:157: error: dereferencing pointer to incomplete type
lst_stree.c:157: error: dereferencing pointer to incomplete type
lst_stree.c:160: error: dereferencing pointer to incomplete type
lst_stree.c:162: error: dereferencing pointer to incomplete type
lst_stree.c:163: error: dereferencing pointer to incomplete type
lst_stree.c:164: error: dereferencing pointer to incomplete type
lst_stree.c:164: error: dereferencing pointer to incomplete type
lst_stree.c:164: error: dereferencing pointer to incomplete type
lst_stree.c:164: error: dereferencing pointer to incomplete type
lst_stree.c:164: error: dereferencing pointer to incomplete type
lst_stree.c: At top level:
lst_stree.c:172: error: syntax error before 'u_int'
lst_stree.c: In function 'node_find_edge_with_startitem':
lst_stree.c:176: error: 'node' undeclared (first use in this function)
lst_stree.c:176: error: 'string' undeclared (first use in this function)
lst_stree.c: In function 'stree_remove_edge':
lst_stree.c:206: error: dereferencing pointer to incomplete type
lst_stree.c:209: error: dereferencing pointer to incomplete type
lst_stree.c:210: error: dereferencing pointer to incomplete type
lst_stree.c:210: error: dereferencing pointer to incomplete type
lst_stree.c:210: error: dereferencing pointer to incomplete type
lst_stree.c:210: error: dereferencing pointer to incomplete type
lst_stree.c:210: error: dereferencing pointer to incomplete type
lst_stree.c:210: error: dereferencing pointer to incomplete type
lst_stree.c:210: error: dereferencing pointer to incomplete type
lst_stree.c: In function 'stree_extend_label_at_leaf':
lst_stree.c:222: error: dereferencing pointer to incomplete type
lst_stree.c:222: error: dereferencing pointer to incomplete type
lst_stree.c: At top level:
lst_stree.c:227: error: syntax error before '*' token
lst_stree.c: In function 'stree_path_end_node':
lst_stree.c:229: error: 'end' undeclared (first use in this function)
lst_stree.c:230: error: 'node' undeclared (first use in this function)
lst_stree.c: At top level:
lst_stree.c:235: error: syntax error before '*' token
lst_stree.c: In function 'stree_path_end_edge':
lst_stree.c:237: error: 'end' undeclared (first use in this function)
lst_stree.c:238: error: 'edge' undeclared (first use in this function)
lst_stree.c:239: error: 'offset' undeclared (first use in this function)
lst_stree.c: At top level:
lst_stree.c:244: error: syntax error before '*' token
lst_stree.c: In function 'stree_path_end_advance':
lst_stree.c:246: error: 'end' undeclared (first use in this function)
lst_stree.c:251: error: 'edge' undeclared (first use in this function)
lst_stree.c:260: error: 'u_int' undeclared (first use in this function)
lst_stree.c:260: error: syntax error before 'lst_edge_get_length'
lst_stree.c: At top level:
lst_stree.c:280: error: syntax error before 'stree_follow_string_slow'
lst_stree.c:281: error: syntax error before 'LST_PathEnd'
lst_stree.c:282: warning: return type defaults to 'int'
lst_stree.c: In function 'stree_follow_string_slow':
lst_stree.c:284: error: 'u_int' undeclared (first use in this function)
lst_stree.c:284: error: syntax error before 'items_todo'
lst_stree.c:286: error: 'tree' undeclared (first use in this function)
lst_stree.c:286: error: 'node' undeclared (first use in this function)
lst_stree.c:286: error: 'string' undeclared (first use in this function)
lst_stree.c:286: error: 'end' undeclared (first use in this function)
lst_stree.c:293: error: 'items_todo' undeclared (first use in this function)
lst_stree.c:301: error: 'items_done' undeclared (first use in this function)
lst_stree.c:311: error: 'common' undeclared (first use in this function)
lst_stree.c:316: error: syntax error before 'lst_edge_get_length'
lst_stree.c: At top level:
lst_stree.c:329: warning: type defaults to 'int' in declaration of 'stree_path_end_node'
lst_stree.c:329: warning: parameter names (without types) in function declaration
lst_stree.c:329: error: conflicting types for 'stree_path_end_node'
lst_stree.c:228: error: previous definition of 'stree_path_end_node' was here
lst_stree.c:329: warning: data definition has no type or storage class
lst_stree.c:330: error: syntax error before 'return'
lst_stree.c:347: error: syntax error before 'LST_PathEnd'
lst_stree.c: In function 'stree_follow_string':
lst_stree.c:351: error: 'u_int' undeclared (first use in this function)
lst_stree.c:351: error: syntax error before 'items_todo'
lst_stree.c:353: error: 'tree' undeclared (first use in this function)
lst_stree.c:353: error: 'node' undeclared (first use in this function)
lst_stree.c:353: error: 'skipstring' undeclared (first use in this function)
lst_stree.c:353: error: 'end' undeclared (first use in this function)
lst_stree.c:376: error: 'items_todo' undeclared (first use in this function)
lst_stree.c:391: error: syntax error before 'edge_len'
lst_stree.c:393: error: 'items_done' undeclared (first use in this function)
lst_stree.c:401: error: 'edge_len' undeclared (first use in this function)
lst_stree.c:401: error: syntax error before 'lst_edge_get_length'
lst_stree.c:435: error: 'common' undeclared (first use in this function)
lst_stree.c: At top level:
lst_stree.c:464: error: syntax error before 'LST_PathEnd'
lst_stree.c: In function 'stree_get_skipstring':
lst_stree.c:468: error: 'end' undeclared (first use in this function)
lst_stree.c:476: error: 'skipstring' undeclared (first use in this function)
lst_stree.c:488: error: 'tree' undeclared (first use in this function)
lst_stree.c:509: error: dereferencing pointer to incomplete type
lst_stree.c:531: error: dereferencing pointer to incomplete type
lst_stree.c: At top level:
lst_stree.c:551: error: syntax error before 'LST_PathEnd'
lst_stree.c: In function 'stree_extend_at_node':
lst_stree.c:556: error: 'end' undeclared (first use in this function)
lst_stree.c:565: error: 'string' undeclared (first use in this function)
lst_stree.c:565: error: 'extend_index' undeclared (first use in this function)
lst_stree.c:572: error: 'tree' undeclared (first use in this function)
lst_stree.c:583: error: 'stop_extensions' undeclared (first use in this function)
lst_stree.c: At top level:
lst_stree.c:605: error: syntax error before 'LST_PathEnd'
lst_stree.c: In function 'stree_extend_at_edge':
lst_stree.c:610: error: 'string' undeclared (first use in this function)
lst_stree.c:610: error: 'extend_index' undeclared (first use in this function)
lst_stree.c:611: error: 'end' undeclared (first use in this function)
lst_stree.c:616: error: 'stop_extensions' undeclared (first use in this function)
lst_stree.c:633: error: 'u_int' undeclared (first use in this function)
lst_stree.c:637: error: 'tree' undeclared (first use in this function)
lst_stree.c:656: error: dereferencing pointer to incomplete type
lst_stree.c: In function 'stree_next_phase':
lst_stree.c:690: error: invalid application of 'sizeof' to incomplete type 'struct lst_phase_num'
lst_stree.c:691: error: dereferencing pointer to incomplete type
lst_stree.c:691: error: dereferencing pointer to incomplete type
lst_stree.c:691: error: dereferencing pointer to incomplete type
lst_stree.c:691: error: dereferencing pointer to incomplete type
lst_stree.c:691: error: dereferencing pointer to incomplete type
lst_stree.c:691: error: dereferencing pointer to incomplete type
lst_stree.c:691: error: dereferencing pointer to incomplete type
lst_stree.c:692: error: dereferencing pointer to incomplete type
lst_stree.c:692: error: dereferencing pointer to incomplete type
lst_stree.c: In function 'stree_add_string_impl':
lst_stree.c:710: error: syntax error before 'end'
lst_stree.c:714: error: storage size of 'skipstring' isn't known
lst_stree.c:715: error: 'u_int' undeclared (first use in this function)
lst_stree.c:715: error: syntax error before 'i'
lst_stree.c:730: error: dereferencing pointer to incomplete type
lst_stree.c:735: error: dereferencing pointer to incomplete type
lst_stree.c:743: error: 'end' undeclared (first use in this function)
lst_stree.c:743: error: dereferencing pointer to incomplete type
lst_stree.c:744: error: 'last_extension' undeclared (first use in this function)
lst_stree.c:748: error: 'i' undeclared (first use in this function)
lst_stree.c:756: error: dereferencing pointer to incomplete type
lst_stree.c:758: error: 'find_skipstring' undeclared (first use in this function)
lst_stree.c:772: error: dereferencing pointer to incomplete type
lst_stree.c:777: error: dereferencing pointer to incomplete type
lst_stree.c:779: error: 'use_end' undeclared (first use in this function)
lst_stree.c:781: error: 'stop_extensions' undeclared (first use in this function)
lst_stree.c:789: error: 'j' undeclared (first use in this function)
lst_stree.c:791: error: dereferencing pointer to incomplete type
lst_stree.c:810: error: dereferencing pointer to incomplete type
lst_stree.c:879: error: dereferencing pointer to incomplete type
lst_stree.c:891: error: dereferencing pointer to incomplete type
lst_stree.c:892: error: dereferencing pointer to incomplete type
lst_stree.c:714: warning: unused variable 'skipstring'
lst_stree.c: In function 'lst_stree_add_string':
lst_stree.c:901: error: syntax error before 'end'
lst_stree.c:902: error: 'u_int' undeclared (first use in this function)
lst_stree.c:907: error: dereferencing pointer to incomplete type
lst_stree.c:909: error: 'items_done' undeclared (first use in this function)
lst_stree.c:909: error: dereferencing pointer to incomplete type
lst_stree.c:909: error: 'end' undeclared (first use in this function)
lst_stree.c:910: error: dereferencing pointer to incomplete type
lst_stree.c:915: error: dereferencing pointer to incomplete type
lst_stree.c:915: error: dereferencing pointer to incomplete type
lst_stree.c:917: error: dereferencing pointer to incomplete type
lst_stree.c: In function 'lst_stree_new':
lst_stree.c:930: error: invalid application of 'sizeof' to incomplete type 'LST_STree'
lst_stree.c:946: error: dereferencing pointer to incomplete type
lst_stree.c: In function 'lst_stree_init':
lst_stree.c:973: error: invalid application of 'sizeof' to incomplete type 'LST_STree'
lst_stree.c:975: error: dereferencing pointer to incomplete type
lst_stree.c:976: error: dereferencing pointer to incomplete type
lst_stree.c:977: error: dereferencing pointer to incomplete type
lst_stree.c:979: error: dereferencing pointer to incomplete type
lst_stree.c:980: error: dereferencing pointer to incomplete type
lst_stree.c:983: error: dereferencing pointer to incomplete type
lst_stree.c:984: error: dereferencing pointer to incomplete type
lst_stree.c:988: error: dereferencing pointer to incomplete type
lst_stree.c:994: error: dereferencing pointer to incomplete type
lst_stree.c:995: error: dereferencing pointer to incomplete type
lst_stree.c:997: error: dereferencing pointer to incomplete type
lst_stree.c:998: error: dereferencing pointer to incomplete type
lst_stree.c: In function 'lst_stree_clear':
lst_stree.c:1013: error: dereferencing pointer to incomplete type
lst_stree.c:1016: error: dereferencing pointer to incomplete type
lst_stree.c:1018: error: dereferencing pointer to incomplete type
lst_stree.c:1019: error: dereferencing pointer to incomplete type
lst_stree.c:1019: error: dereferencing pointer to incomplete type
lst_stree.c:1019: error: dereferencing pointer to incomplete type
lst_stree.c:1019: error: dereferencing pointer to incomplete type
lst_stree.c:1019: error: dereferencing pointer to incomplete type
lst_stree.c:1026: error: dereferencing pointer to incomplete type
lst_stree.c:1036: error: dereferencing pointer to incomplete type
lst_stree.c: In function 'lst_stree_allow_duplicates':
lst_stree.c:1047: error: dereferencing pointer to incomplete type
lst_stree.c: In function 'fix_tree_cb':
lst_stree.c:1071: error: dereferencing pointer to incomplete type
lst_stree.c:1080: error: dereferencing pointer to incomplete type
lst_stree.c:1082: error: dereferencing pointer to incomplete type
lst_stree.c:1082: error: dereferencing pointer to incomplete type
lst_stree.c:1082: error: dereferencing pointer to incomplete type
lst_stree.c:1082: error: dereferencing pointer to incomplete type
lst_stree.c:1082: error: dereferencing pointer to incomplete type
lst_strMaking install in src
if /bin/sh ../libtool --mode=compile --tag=CC gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -W -Wall -g -O2 -MT lst_stree.lo -MD -MP -MF ".deps/lst_stree.Tpo" -c -o lst_stree.lo lst_stree.c; \
then mv -f ".deps/lst_stree.Tpo" ".deps/lst_stree.Plo"; else rm -f ".deps/lst_stree.Tpo"; exit 1; fi
ee.c:1083: error: dereferencing pointer to incomplete type
lst_stree.c:1083: error: dereferencing pointer to incomplete type
lst_stree.c:1083: error: dereferencing pointer to incomplete type
lst_stree.c:1083: error: dereferencing pointer to incomplete type
lst_stree.c:1083: error: dereferencing pointer to incomplete type
lst_stree.c:1084: error: dereferencing pointer to incomplete type
lst_stree.c:1084: error: dereferencing pointer to incomplete type
lst_stree.c:1084: error: dereferencing pointer to incomplete type
lst_stree.c:1084: error: dereferencing pointer to incomplete type
lst_stree.c:1084: error: dereferencing pointer to incomplete type
lst_stree.c:1084: error: dereferencing pointer to incomplete type
lst_stree.c:1084: error: dereferencing pointer to incomplete type
lst_stree.c:1084: error: dereferencing pointer to incomplete type
lst_stree.c:1086: error: dereferencing pointer to incomplete type
lst_stree.c:1087: error: dereferencing pointer to incomplete type
lst_stree.c:1093: error: dereferencing pointer to incomplete type
lst_stree.c:1094: error: dereferencing pointer to incomplete type
lst_stree.c:1094: error: dereferencing pointer to incomplete type
lst_stree.c:1095: error: dereferencing pointer to incomplete type
lst_stree.c:1095: error: dereferencing pointer to incomplete type
lst_stree.c:1096: error: dereferencing pointer to incomplete type
lst_stree.c:1096: error: dereferencing pointer to incomplete type
lst_stree.c: In function 'lst_stree_remove_string':
lst_stree.c:1116: error: dereferencing pointer to incomplete type
lst_stree.c:1127: error: dereferencing pointer to incomplete type
lst_stree.c:1127: error: dereferencing pointer to incomplete type
lst_stree.c:1127: error: dereferencing pointer to incomplete type
lst_stree.c:1127: error: dereferencing pointer to incomplete type
lst_stree.c:1127: error: dereferencing pointer to incomplete type
lst_stree.c:1127: error: dereferencing pointer to incomplete type
lst_stree.c:1132: error: dereferencing pointer to incomplete type
lst_stree.c:1132: error: dereferencing pointer to incomplete type
lst_stree.c:1132: error: dereferencing pointer to incomplete type
lst_stree.c:1132: error: dereferencing pointer to incomplete type
lst_stree.c:1132: error: dereferencing pointer to incomplete type
lst_stree.c:1132: error: dereferencing pointer to incomplete type
lst_stree.c:1138: error: dereferencing pointer to incomplete type
lst_stree.c:1142: error: dereferencing pointer to incomplete type
lst_stree.c:1144: error: dereferencing pointer to incomplete type
lst_stree.c:1152: error: dereferencing pointer to incomplete type
lst_stree.c:1153: error: dereferencing pointer to incomplete type
lst_stree.c:1159: error: dereferencing pointer to incomplete type
lst_stree.c:1160: error: dereferencing pointer to incomplete type
lst_stree.c:1160: error: dereferencing pointer to incomplete type
lst_stree.c:1160: error: dereferencing pointer to incomplete type
lst_stree.c:1169: error: dereferencing pointer to incomplete type
lst_stree.c:1170: error: dereferencing pointer to incomplete type
lst_stree.c:1192: error: dereferencing pointer to incomplete type
lst_stree.c:1194: error: dereferencing pointer to incomplete type
lst_stree.c:1194: error: dereferencing pointer to incomplete type
lst_stree.c:1197: error: dereferencing pointer to incomplete type
lst_stree.c:1197: error: dereferencing pointer to incomplete type
lst_stree.c: In function 'lst_stree_get_string_index':
lst_stree.c:1216: error: dereferencing pointer to incomplete type
lst_stree.c:1216: error: dereferencing pointer to incomplete type
lst_stree.c:1220: error: dereferencing pointer to incomplete type
lst_stree.c:1220: error: dereferencing pointer to incomplete type
lst_stree.c: In function 'lst_node_get_parent':
lst_stree.c:1231: error: dereferencing pointer to incomplete type
lst_stree.c:1234: error: dereferencing pointer to incomplete type
lst_stree.c: In function 'lst_node_is_leaf':
lst_stree.c:1244: error: dereferencing pointer to incomplete type
lst_stree.c: In function 'lst_node_is_root':
lst_stree.c:1254: error: dereferencing pointer to incomplete type
lst_stree.c: In function 'lst_node_get_string_length':
lst_stree.c:1268: error: dereferencing pointer to incomplete type
lst_stree.c:1269: error: dereferencing pointer to incomplete type
lst_stree.c: In function 'lst_node_get_string':
lst_stree.c:1288: error: dereferencing pointer to incomplete type
lst_stree.c:1289: error: dereferencing pointer to incomplete type
lst_stree.c:1289: error: dereferencing pointer to incomplete type
lst_stree.c:1293: error: dereferencing pointer to incomplete type
lst_stree.c:1298: error: dereferencing pointer to incomplete type
lst_stree.c:1299: error: dereferencing pointer to incomplete type
lst_stree.c:1301: error: dereferencing pointer to incomplete type
lst_stree.c:1306: error: dereferencing pointer to incomplete type
lst_stree.c:1306: error: dereferencing pointer to incomplete type
lst_stree.c:1318: error: dereferencing pointer to incomplete type
make[2]: *** [lst_stree.lo] Error 1
make[1]: *** [all-recursive] Error 1
make: *** [all] Error 2
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -W -Wall -g -O2 -MT lst_stree.lo -MD -MP -MF .deps/lst_stree.Tpo -c lst_stree.c -fno-common -DPIC -o lst_stree.o
In file included from lst_structs.h:29,
from lst_stree.h:34,
from lst_stree.c:34:
lst_string.h:101: error: syntax error before 'u_char'
lst_string.h:101: warning: no semicolon at end of struct or union
lst_string.h:103: warning: type defaults to 'int' in declaration of 'num_items'
lst_string.h:103: warning: data definition has no type or storage class
lst_string.h:104: error: syntax error before 'item_size'
lst_string.h:104: warning: type defaults to 'int' in declaration of 'item_size'
lst_string.h:104: warning: data definition has no type or storage class
lst_string.h:107: error: syntax error before '}' token
lst_string.h:130: error: syntax error before 'u_int'
lst_string.h:130: warning: no semicolon at end of struct or union
lst_string.h:136: warning: type defaults to 'int' in declaration of 'end_index'
lst_string.h:136: warning: data definition has no type or storage class
lst_string.h:137: error: syntax error before 'end_index_local'
lst_string.h:137: warning: type defaults to 'int' in declaration of 'end_index_local'
lst_string.h:137: warning: data definition has no type or storage class
lst_string.h:143: error: syntax error before 'extra_index'
lst_string.h:143: warning: type defaults to 'int' in declaration of 'extra_index'
lst_string.h:143: warning: data definition has no type or storage class
lst_string.h:165: error: syntax error before 'u_int'
lst_string.h:180: error: syntax error before 'u_int'
lst_string.h:217: error: syntax error before 'lst_string_get_length'
lst_string.h:217: warning: type defaults to 'int' in declaration of 'lst_string_get_length'
lst_string.h:217: warning: data definition has no type or storage class
lst_string.h:228: error: syntax error before 'u_int'
lst_string.h:254: error: syntax error before 'u_int'
lst_string.h:271: error: syntax error before 'u_int'
lst_string.h:289: error: syntax error before 'lst_string_items_common'
lst_string.h:289: error: syntax error before 'u_int'
lst_string.h:291: warning: type defaults to 'int' in declaration of 'lst_string_items_common'
lst_string.h:291: warning: data definition has no type or storage class
In file included from lst_stree.h:34,
from lst_stree.c:34:
lst_structs.h:47: error: field 'range' has incomplete type
lst_structs.h:55: error: syntax error before 'u_int'
lst_structs.h:55: warning: no semicolon at end of struct or union
lst_structs.h:67: error: 'index' redeclared as different kind of symbol
lst_structs.h:68: error: syntax error before 'id'
lst_structs.h:68: warning: type defaults to 'int' in declaration of 'id'
lst_structs.h:68: warning: data definition has no type or storage class
lst_structs.h:71: error: syntax error before 'bus_visited'
lst_structs.h:71: warning: type defaults to 'int' in declaration of 'bus_visited'
lst_structs.h:71: warning: data definition has no type or storage class
lst_structs.h:79: error: syntax error before 'u_int'
lst_structs.h:79: warning: no semicolon at end of struct or union
lst_structs.h:96: error: syntax error before 'u_int'
lst_structs.h:96: warning: no semicolon at end of struct or union
lst_structs.h:103: warning: type defaults to 'int' in declaration of 'phase'
lst_structs.h:103: warning: data definition has no type or storage class
lst_structs.h:113: error: syntax error before 'ext'
lst_structs.h:113: warning: type defaults to 'int' in declaration of 'ext'
lst_structs.h:113: warning: data definition has no type or storage class
lst_structs.h:119: error: conflicting types for 'leafs'
lst_structs.h:61: error: previous declaration of 'leafs' was here
lst_structs.h:143: error: syntax error before 'visitors'
lst_structs.h:143: warning: type defaults to 'int' in declaration of 'visitors'
lst_structs.h:143: error: conflicting types for 'visitors'
lst_structs.h:70: error: previous declaration of 'visitors' was here
lst_structs.h:143: warning: data definition has no type or storage class
In file included from lst_stree.c:36:
lst_algorithms.h:107: error: syntax error before 'lst_alg_set_visitors'
lst_algorithms.h:107: warning: type defaults to 'int' in declaration of 'lst_alg_set_visitors'
lst_algorithms.h:107: warning: data definition has no type or storage class
lst_algorithms.h:128: error: syntax error before 'u_int'
lst_algorithms.h:149: error: syntax error before 'u_int'
lst_stree.c:55: error: syntax error before 'u_int'
lst_stree.c:55: warning: no semicolon at end of struct or union
lst_stree.c:57: warning: type defaults to 'int' in declaration of 'LST_PathEnd'
lst_stree.c:57: warning: data definition has no type or storage class
lst_stree.c:64: error: syntax error before 'u_int'
lst_stree.c: In function 'edge_new':
lst_stree.c:76: error: 'src_node' undeclared (first use in this function)
lst_stree.c:76: error: (Each undeclared identifier is reported only once
lst_stree.c:76: error: for each function it appears in.)
lst_stree.c:77: error: 'dst_node' undeclared (first use in this function)
lst_stree.c:79: error: 'string' undeclared (first use in this function)
lst_stree.c:80: error: 'start_index' undeclared (first use in this function)
lst_stree.c: At top level:
lst_stree.c:98: error: syntax error before 'u_int'
lst_stree.c: In function 'edge_leaf_new':
lst_stree.c:100: error: 'src_node' undeclared (first use in this function)
lst_stree.c:100: error: 'dst_node' undeclared (first use in this function)
lst_stree.c:100: error: 'string' undeclared (first use in this function)
lst_stree.c:100: error: 'start_index' undeclared (first use in this function)
lst_stree.c:108: error: 'tree' undeclared (first use in this function)
lst_stree.c: In function 'node_new':
lst_stree.c:129: error: nested functions are disabled, use -fnested-functions to re-enable
lst_stree.c:129: error: syntax error before 'id'
lst_stree.c:132: error: invalid application of 'sizeof' to incomplete type 'LST_Node'
lst_stree.c:140: error: dereferencing pointer to incomplete type
lst_stree.c:141: error: dereferencing pointer to incomplete type
lst_stree.c:142: error: dereferencing pointer to incomplete type
lst_stree.c: In function 'node_free':
lst_stree.c:156: error: dereferencing pointer to incomplete type
lst_stree.c:156: error: dereferencing pointer to incomplete type
lst_stree.c:157: error: dereferencing pointer to incomplete type
lst_stree.c:157: error: dereferencing pointer to incomplete type
lst_stree.c:157: error: dereferencing pointer to incomplete type
lst_stree.c:157: error: dereferencing pointer to incomplete type
lst_stree.c:157: error: dereferencing pointer to incomplete type
lst_stree.c:160: error: dereferencing pointer to incomplete type
lst_stree.c:162: error: dereferencing pointer to incomplete type
lst_stree.c:163: error: dereferencing pointer to incomplete type
lst_stree.c:164: error: dereferencing pointer to incomplete type
lst_stree.c:164: error: dereferencing pointer to incomplete type
lst_stree.c:164: error: dereferencing pointer to incomplete type
lst_stree.c:164: error: dereferencing pointer to incomplete type
lst_stree.c:164: error: dereferencing pointer to incomplete type
lst_stree.c: At top level:
lst_stree.c:172: error: syntax error before 'u_int'
lst_stree.c: In function 'node_find_edge_with_startitem':
lst_stree.c:176: error: 'node' undeclared (first use in this function)
lst_stree.c:176: error: 'string' undeclared (first use in this function)
lst_stree.c: In function 'stree_remove_edge':
lst_stree.c:206: error: dereferencing pointer to incomplete type
lst_stree.c:209: error: dereferencing pointer to incomplete type
lst_stree.c:210: error: dereferencing pointer to incomplete type
lst_stree.c:210: error: dereferencing pointer to incomplete type
lst_stree.c:210: error: dereferencing pointer to incomplete type
lst_stree.c:210: error: dereferencing pointer to incomplete type
lst_stree.c:210: error: dereferencing pointer to incomplete type
lst_stree.c:210: error: dereferencing pointer to incomplete type
lst_stree.c:210: error: dereferencing pointer to incomplete type
lst_stree.c: In function 'stree_extend_label_at_leaf':
lst_stree.c:222: error: dereferencing pointer to incomplete type
lst_stree.c:222: error: dereferencing pointer to incomplete type
lst_stree.c: At top level:
lst_stree.c:227: error: syntax error before '*' token
lst_stree.c: In function 'stree_path_end_node':
lst_stree.c:229: error: 'end' undeclared (first use in this function)
lst_stree.c:230: error: 'node' undeclared (first use in this function)
lst_stree.c: At top level:
lst_stree.c:235: error: syntax error before '*' token
lst_stree.c: In function 'stree_path_end_edge':
lst_stree.c:237: error: 'end' undeclared (first use in this function)
lst_stree.c:238: error: 'edge' undeclared (first use in this function)
lst_stree.c:239: error: 'offset' undeclared (first use in this function)
lst_stree.c: At top level:
lst_stree.c:244: error: syntax error before '*' token
lst_stree.c: In function 'stree_path_end_advance':
lst_stree.c:246: error: 'end' undeclared (first use in this function)
lst_stree.c:251: error: 'edge' undeclared (first use in this function)
lst_stree.c:260: error: 'u_int' undeclared (first use in this function)
lst_stree.c:260: error: syntax error before 'lst_edge_get_length'
lst_stree.c: At top level:
lst_stree.c:280: error: syntax error before 'stree_follow_string_slow'
lst_stree.c:281: error: syntax error before 'LST_PathEnd'
lst_stree.c:282: warning: return type defaults to 'int'
lst_stree.c: In function 'stree_follow_string_slow':
lst_stree.c:284: error: 'u_int' undeclared (first use in this function)
lst_stree.c:284: error: syntax error before 'items_todo'
lst_stree.c:286: error: 'tree' undeclared (first use in this function)
lst_stree.c:286: error: 'node' undeclared (first use in this function)
lst_stree.c:286: error: 'string' undeclared (first use in this function)
lst_stree.c:286: error: 'end' undeclared (first use in this function)
lst_stree.c:293: error: 'items_todo' undeclared (first use in this function)
lst_stree.c:301: error: 'items_done' undeclared (first use in this function)
lst_stree.c:311: error: 'common' undeclared (first use in this function)
lst_stree.c:316: error: syntax error before 'lst_edge_get_length'
lst_stree.c: At top level:
lst_stree.c:329: warning: type defaults to 'int' in declaration of 'stree_path_end_node'
lst_stree.c:329: warning: parameter names (without types) in function declaration
lst_stree.c:329: error: conflicting types for 'stree_path_end_node'
lst_stree.c:228: error: previous definition of 'stree_path_end_node' was here
lst_stree.c:329: warning: data definition has no type or storage class
lst_stree.c:330: error: syntax error before 'return'
lst_stree.c:347: error: syntax error before 'LST_PathEnd'
lst_stree.c: In function 'stree_follow_string':
lst_stree.c:351: error: 'u_int' undeclared (first use in this function)
lst_stree.c:351: error: syntax error before 'items_todo'
lst_stree.c:353: error: 'tree' undeclared (first use in this function)
lst_stree.c:353: error: 'node' undeclared (first use in this function)
lst_stree.c:353: error: 'skipstring' undeclared (first use in this function)
lst_stree.c:353: error: 'end' undeclared (first use in this function)
lst_stree.c:376: error: 'items_todo' undeclared (first use in this function)
lst_stree.c:391: error: syntax error before 'edge_len'
lst_stree.c:393: error: 'items_done' undeclared (first use in this function)
lst_stree.c:401: error: 'edge_len' undeclared (first use in this function)
lst_stree.c:401: error: syntax error before 'lst_edge_get_length'
lst_stree.c:435: error: 'common' undeclared (first use in this function)
lst_stree.c: At top level:
lst_stree.c:464: error: syntax error before 'LST_PathEnd'
lst_stree.c: In function 'stree_get_skipstring':
lst_stree.c:468: error: 'end' undeclared (first use in this function)
lst_stree.c:476: error: 'skipstring' undeclared (first use in this function)
lst_stree.c:488: error: 'tree' undeclared (first use in this function)
lst_stree.c:509: error: dereferencing pointer to incomplete type
lst_stree.c:531: error: dereferencing pointer to incomplete type
lst_stree.c: At top level:
lst_stree.c:551: error: syntax error before 'LST_PathEnd'
lst_stree.c: In function 'stree_extend_at_node':
lst_stree.c:556: error: 'end' undeclared (first use in this function)
lst_stree.c:565: error: 'string' undeclared (first use in this function)
lst_stree.c:565: error: 'extend_index' undeclared (first use in this function)
lst_stree.c:572: error: 'tree' undeclared (first use in this function)
lst_stree.c:583: error: 'stop_extensions' undeclared (first use in this function)
lst_stree.c: At top level:
lst_stree.c:605: error: syntax error before 'LST_PathEnd'
lst_stree.c: In function 'stree_extend_at_edge':
lst_stree.c:610: error: 'string' undeclared (first use in this function)
lst_stree.c:610: error: 'extend_index' undeclared (first use in this function)
lst_stree.c:611: error: 'end' undeclared (first use in this function)
lst_stree.c:616: error: 'stop_extensions' undeclared (first use in this function)
lst_stree.c:633: error: 'u_int' undeclared (first use in this function)
lst_stree.c:637: error: 'tree' undeclared (first use in this function)
lst_stree.c:656: error: dereferencing pointer to incomplete type
lst_stree.c: In function 'stree_next_phase':
lst_stree.c:690: error: invalid application of 'sizeof' to incomplete type 'struct lst_phase_num'
lst_stree.c:691: error: dereferencing pointer to incomplete type
lst_stree.c:691: error: dereferencing pointer to incomplete type
lst_stree.c:691: error: dereferencing pointer to incomplete type
lst_stree.c:691: error: dereferencing pointer to incomplete type
lst_stree.c:691: error: dereferencing pointer to incomplete type
lst_stree.c:691: error: dereferencing pointer to incomplete type
lst_stree.c:691: error: dereferencing pointer to incomplete type
lst_stree.c:692: error: dereferencing pointer to incomplete type
lst_stree.c:692: error: dereferencing pointer to incomplete type
lst_stree.c: In function 'stree_add_string_impl':
lst_stree.c:710: error: syntax error before 'end'
lst_stree.c:714: error: storage size of 'skipstring' isn't known
lst_stree.c:715: error: 'u_int' undeclared (first use in this function)
lst_stree.c:715: error: syntax error before 'i'
lst_stree.c:730: error: dereferencing pointer to incomplete type
lst_stree.c:735: error: dereferencing pointer to incomplete type
lst_stree.c:743: error: 'end' undeclared (first use in this function)
lst_stree.c:743: error: dereferencing pointer to incomplete type
lst_stree.c:744: error: 'last_extension' undeclared (first use in this function)
lst_stree.c:748: error: 'i' undeclared (first use in this function)
lst_stree.c:756: error: dereferencing pointer to incomplete type
lst_stree.c:758: error: 'find_skipstring' undeclared (first use in this function)
lst_stree.c:772: error: dereferencing pointer to incomplete type
lst_stree.c:777: error: dereferencing pointer to incomplete type
lst_stree.c:779: error: 'use_end' undeclared (first use in this function)
lst_stree.c:781: error: 'stop_extensions' undeclared (first use in this function)
lst_stree.c:789: error: 'j' undeclared (first use in this function)
lst_stree.c:791: error: dereferencing pointer to incomplete type
lst_stree.c:810: error: dereferencing pointer to incomplete type
lst_stree.c:879: error: dereferencing pointer to incomplete type
lst_stree.c:891: error: dereferencing pointer to incomplete type
lst_stree.c:892: error: dereferencing pointer to incomplete type
lst_stree.c:714: warning: unused variable 'skipstring'
lst_stree.c: In function 'lst_stree_add_string':
lst_stree.c:901: error: syntax error before 'end'
lst_stree.c:902: error: 'u_int' undeclared (first use in this function)
lst_stree.c:907: error: dereferencing pointer to incomplete type
lst_stree.c:909: error: 'items_done' undeclared (first use in this function)
lst_stree.c:909: error: dereferencing pointer to incomplete type
lst_stree.c:909: error: 'end' undeclared (first use in this function)
lst_stree.c:910: error: dereferencing pointer to incomplete type
lst_stree.c:915: error: dereferencing pointer to incomplete type
lst_stree.c:915: error: dereferencing pointer to incomplete type
lst_stree.c:917: error: dereferencing pointer to incomplete type
lst_stree.c: In function 'lst_stree_new':
lst_stree.c:930: error: invalid application of 'sizeof' to incomplete type 'LST_STree'
lst_stree.c:946: error: dereferencing pointer to incomplete type
lst_stree.c: In function 'lst_stree_init':
lst_stree.c:973: error: invalid application of 'sizeof' to incomplete type 'LST_STree'
lst_stree.c:975: error: dereferencing pointer to incomplete type
lchecking for gcc... gcc
st_stree.c:976: error: dereferencing pointer to incomplete type
lst_stree.c:977: error: dereferencing pointer to incomplete type
lst_stree.c:979: error: dereferencing pointer to incomplete type
lst_stree.c:980: error: dereferencing pointer to incomplete type
lst_stree.c:983: error: dereferencing pointer to incomplete type
lst_stree.c:984: error: dereferencing pointer to incomplete type
lst_stree.c:988: error: dereferencing pointer to incomplete type
lst_stree.c:994: error: dereferencing pointer to incomplete type
lst_stree.c:995: error: dereferencing pointer to incomplete type
lst_stree.c:997: error: dereferencing pointer to incomplete type
lst_stree.c:998: error: dereferencing pointer to incomplete type
lst_stree.c: In function 'lst_stree_clear':
lst_stree.c:1013: error: dereferencing pointer to incomplete type
lst_stree.c:1016: error: dereferencing pointer to incomplete type
lst_stree.c:1018: error: dereferencing pointer to incomplete type
lst_stree.c:1019: error: dereferencing pointer to incomplete type
lst_stree.c:1019: error: dereferencing pointer to incomplete type
lst_stree.c:1019: error: dereferencing pointer to incomplete type
lst_stree.c:1019: error: dereferencing pointer to incomplete type
lst_stree.c:1019: error: dereferencing pointer to incomplete type
lst_stree.c:1026: error: dereferencing pointer to incomplete type
lst_stree.c:1036: error: dereferencing pointer to incomplete type
lst_stree.c: In function 'lst_stree_allow_duplicates':
lst_stree.c:1047: error: dereferencing pointer to incomplete type
lst_stree.c: In function 'fix_tree_cb':
lst_stree.c:1071: error: dereferencing pointer to incomplete type
lst_stree.c:1080: error: dereferencing pointer to incomplete type
lst_stree.c:1082: error: dereferencing pointer to incomplete type
lst_stree.c:1082: error: dereferencing pointer to incomplete type
lst_stree.c:1082: error: dereferencing pointer to incomplete type
lst_stree.c:1082: error: dereferencing pointer to incomplete type
lst_stree.c:1082: error: dereferencing pointer to incomplete type
lst_stree.c:1083: error: dereferencing pointer to incomplete type
lst_stree.c:1083: error: dereferencing pointer to incomplete type
lst_stree.c:1083: error: dereferencing pointer to incomplete type
lst_stree.c:1083: error: dereferencing pointer to incomplete type
lst_stree.c:1083: error: dereferencing pointer to incomplete type
lst_stree.c:1084: error: dereferencing pointer to incomplete type
lst_stree.c:1084: error: dereferencing pointer to incomplete type
lst_stree.c:1084: error: dereferencing pointer to incomplete type
lst_stree.c:1084: error: dereferencing pointer to incomplete type
lst_stree.c:1084: error: dereferencing pointer to incomplete type
lst_stree.c:1084: error: dereferencing pointer to incomplete type
lst_stree.c:1084: error: dereferencing pointer to incomplete type
lst_stree.c:1084: error: dereferencing pointer to incomplete type
lst_stree.c:1086: error: dereferencing pointer to incomplete type
lst_stree.c:1087: error: dereferencing pointer to incomplete type
lst_stree.c:1093: error: dereferencing pointer to incomplete type
lst_stree.c:1094: error: dereferencing pointer to incomplete type
lst_stree.c:1094: error: dereferencing pointer to incomplete type
lst_stree.c:1095: error: dereferencing pointer to incomplete type
lst_stree.c:1095: error: dereferencing pointer to incomplete type
lst_stree.c:1096: error: dereferencing pointer to incomplete type
lst_stree.c:1096: error: dereferencing pointer to incomplete type
lst_stree.c: In function 'lst_stree_remove_string':
lst_stree.c:1116: error: dereferencing pointer to incomplete type
lst_stree.c:1127: error: dereferencing pointer to incomplete type
lst_stree.c:1127: error: dereferencing pointer to incomplete type
lst_stree.c:1127: error: dereferencing pointer to incomplete type
lst_stree.c:1127: error: dereferencing pointer to incomplete type
lst_stree.c:1127: error: dereferencing pointer to incomplete type
lst_stree.c:1127: error: dereferencing pointer to incomplete type
lst_stree.c:1132: error: dereferencing pointer to incomplete type
lst_stree.c:1132: errorchecking for C compiler default output file name... : dereferencing pointer to incomplete type
lst_stree.c:1132: error: dereferencing pointer to incomplete type
lst_stree.c:1132: error: dereferencing pointer to incomplete type
lst_stree.c:1132: error: dereferencing pointer to incomplete type
lst_stree.c:1132: error: dereferencing pointer to incomplete type
lst_stree.c:1138: error: dereferencing pointer to incomplete type
lst_stree.c:1142: error: dereferencing pointer to incomplete type
lst_stree.c:1144: error: dereferencing pointer to incomplete type
lst_stree.c:1152: error: dereferencing pointer to incomplete type
lst_stree.c:1153: error: dereferencing pointer to incomplete type
lst_stree.c:1159: error: dereferencing pointer to incomplete type
lst_stree.c:1160: error: dereferencing pointer to incomplete type
lst_stree.c:1160: error: dereferencing pointer to incomplete type
lst_stree.c:1160: error: dereferencing pointer to incomplete type
lst_stree.c:1169: error: dereferencing pointer to incomplete type
lst_stree.c:1170: error: dereferencing pointer to incomplete type
lst_stree.c:1192: error: dereferencing pointer to incomplete type
lst_stree.c:1194: error: dereferencing pointer to incomplete type
lst_stree.c:1194: error: dereferencing pointer to incomplete type
lst_stree.c:1197: error: dereferencing pointer to incomplete type
lst_stree.c:1197: error: dereferencing pointer to incomplete type
lst_stree.c: In function 'lst_stree_get_string_index':
lst_stree.c:1216: error: dereferencing pointer to incomplete type
lst_stree.c:1216: error: dereferencing pointer to incomplete type
lst_stree.c:1220: error: dereferencing pointer to incomplete type
lst_stree.c:1220: error: dereferencing pointer to incomplete type
lst_stree.c: In function 'lst_node_get_parent':
lst_stree.c:1231: error: dereferencing pointer to incomplete type
lst_stree.c:1234: error: dereferencing pointer to incomplete type
lst_stree.c: In function 'lst_node_is_leaf':
lst_stree.c:1244: error: dereferencing pointer to incomplete type
lst_stree.c: In function 'lst_node_is_root':
lst_stree.c:1254: error: dereferencing pointer to incomplete type
lst_stree.c: In function 'lst_node_get_string_length':
lst_stree.c:1268: error: dereferencing pointer to incomplete type
lst_stree.c:1269: error: dereferencing pointer to incomplete type
lst_stree.c: In function 'lst_node_get_string':
lst_stree.c:1288: error: dereferencing pointer to incomplete type
lst_stree.c:1289: error: dereferencing pointer to incomplete type
lst_stree.c:1289: error: dereferencing pointer to incomplete type
lst_stree.c:1293: error: dereferencing pointer to incomplete type
lst_stree.c:1298: error: dereferencing pointer to incomplete type
lst_stree.c:1299: error: dereferencing pointer to incomplete type
lst_stree.c:1301: error: dereferencing pointer to incomplete type
lst_stree.c:1306: error: dereferencing pointer to incomplete type
lst_stree.c:1306: error: dereferencing pointer to incomplete type
lst_stree.c:1318: error: dereferencing pointer to incomplete type
make[1]: *** [lst_stree.lo] Error 1
make: *** [install-recursive] Error 1
a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking how to run the C preprocessor... gcc -E
checking for egrep... grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking stree/lst_structs.h usability... yes
checking stree/lst_structs.h presence... yes
checking for stree/lst_structs.h... yes
configure: creating ./config.status
config.status: creating src/Makevars
Building Rlibstree
** libs
** arch - ppc
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I../local/include/ -I/usr/local/include -fPIC -g -O2 -c prefix.c -o prefix.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I../local/include/ -I/usr/local/include -fPIC -g -O2 -c stree.c -o stree.o
stree.c: In function ‘R_newStringSet’:
stree.c:100: warning: passing argument 1 of ‘lst_string_new’ discards qualifiers from pointer target type
stree.c: In function ‘R_stringSetAdd’:
stree.c:316: warning: passing argument 1 of ‘lst_string_new’ discards qualifiers from pointer target type
gcc-4.2 -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o Rlibstree.so prefix.o stree.o -L../local/lib -lstree -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
ld: warning in /usr/local/lib/libstree.so, file is not of required architecture
** R
** inst
** preparing package for lazy loading
Creating a new generic function for "lapply" in "Rlibstree"
Creating a new generic function for "sapply" in "Rlibstree"
Creating a new generic function for "append" in "Rlibstree"
** help
>>> Building/Updating help pages for package 'Rlibstree'
Formats: text html latex example
StringSet-class text html latex example
StringSet text html latex example
SuffixTree-class text html latex example
SuffixTree-methods text html latex
append-methods text html latex
getCommonPrefix text html latex example
getLongestSubstring text html latex example
lapply-methods text html latex
** building package indices ...
* DONE (Rlibstree)
The downloaded packages are in
/private/var/folders/4q/4qrd+OVfHLOrqZ6iI1mrA++++TI/-Tmp-/RtmpqocqcY/downloaded_packages
>
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