[BioC] Error with beadarray example
lewinger at usc.edu
Fri Dec 5 10:34:02 CET 2008
As a way to learn the beadarray package (I'm new to microarray analysis and have some Illumina microarray summary data to analyze) I've tried the example in the document "bead-summary data using beadarray". As indicated in the document I downloaded and unzipped the example summary data from:
However, I get the following error message when issuing the example commands:
> dataFile <- "SampleProbeProfile.txt"
> sampleSheet <- "SampleSheet.csv"
> qcFile <- "ControlGeneProfile.txt"
> BSData = readBeadSummaryData(dataFile = dataFile, qcFile = qcFile, sampleSheet = sampleSheet, controlID = "TargetID")
Error in .nextMethod(e1, e2) :
comparison of these types is not implemented
I'm using beadarray 1.10.0 and R 2.8.0 on windows XP (session info below). I'd appreciate any help!
Juan Pablo Lewinger
Department of Preventive Medicine
University of Southern California
R version 2.8.0 (2008-10-20)
LC_COLLATE=English_United States.1252;LC_CTYPE=English_United States.1252;LC_MONETARY=English_United States.1252;LC_NUMERIC=C;LC_TIME=English_United States.1252
attached base packages:
 tools stats graphics grDevices utils datasets methods base
other attached packages:
 beadarray_1.10.0 sma_0.5.15 hwriter_0.93 geneplotter_1.14.0 lattice_0.17-17 annotate_1.14.1
 Biobase_1.14.1 limma_2.9.17
loaded via a namespace (and not attached):
 AnnotationDbi_1.2.2 DBI_0.2-4 grid_2.8.0 KernSmooth_2.22-22 RColorBrewer_1.0-2 RSQLite_0.7-1
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