September 2011 Archives by author

• Messages sorted by: [ thread ] [ subject ] [ date ]
• More info on this list...

Starting: Thu Sep 1 01:11:20 CEST 2011
Ending: Fri Sep 30 23:51:31 CEST 2011
Messages: 443

• [BioC] "timecourse" package, problem with ordering of samples.   dha 2001
• [BioC] Differential Gene Expression Analyses   Avoks AO
• [BioC] Combining GEOquery with samr or siggenes   Voke AO
• [BioC] Combining GEOquery with samr or siggenes   Ovokeraye Achinike-Oduaran
• [BioC] GEO: Finding up- and down-regulated genes in GDS records   Ovokeraye Achinike-Oduaran
• [BioC] GEO: Finding up- and down-regulated genes in GDS records   Ovokeraye Achinike-Oduaran
• [BioC] GEOquery and GSE error   Ovokeraye Achinike-Oduaran
• [BioC] GEOquery and GSE error   Ovokeraye Achinike-Oduaran
• [BioC] GEOquery and GSE error   Ovokeraye Achinike-Oduaran
• [BioC] GSEs and Platforms   Ovokeraye Achinike-Oduaran
• [BioC] Clustering of 30,000+ genes   Naomi Altman
• [BioC] Map GO terms to Uniprot from org.Hs.eg   Sandeep Amberkar
• [BioC] [Bioc-devel] DEG data analysis   Simon Anders
• [BioC] FW: DESeq query regarding rerVarA and resVarB columns   Simon Anders
• [BioC] DESEQ problem   Simon Anders
• [BioC] questions about DESeq package: estimateSizeFactors() function   Simon Anders
• [BioC] DESeq counts normalized option fails   Simon Anders
• [BioC] Detecting Up-Regulated Genes   ANIRBAN BHAR
• [BioC] Problem to store p-value of anova() method   ANIRBAN BHAR
• [BioC] Problem_retrieving raw dataset from CEL files   ANIRBAN BHAR
• [BioC] Postdoctoral Fellow - Bioinformatics - Singapore, IMCB, Biopolis   Emilie Bard
• [BioC] AnnBuilder not available   Carl Baribault
• [BioC] AnnBuilder not available   Carl Baribault
• [BioC] new affy zebrafish genechip cdf   Henrik Bengtsson
• [BioC] lumi and/or beadarray for getting beadSummary   Dick Beyer
• [BioC] warnings from getGeo() in Geoquery package   Silav Bremos
• [BioC] problem with lumiR.batch log2 transformation   Briggs, Chris
• [BioC] fRMA error when using exprs()   Sylvain Brohée
• [BioC] fRMA error when using exprs()   Sylvain Brohée
• [BioC] Problem installing Rsamtools   Gordon Brown
• [BioC] Error in colSums(counts) : 'x' must be numeric   Vincent Carey
• [BioC] Problem to store p-value of anova() method   Vincent Carey
• [BioC] question on DEXSeq package   Vincent Carey
• [BioC] SNPcounts error in SNPlocs.Hsapiens.dbSNP.20110815_0.99.3 (i.e., my attempt to update SNPlocs to dbSNP build 134)   Vincent Carey
• [BioC] SNPcounts error in SNPlocs.Hsapiens.dbSNP.20110815_0.99.3 (i.e., my attempt to update SNPlocs to dbSNP build 134)   Vincent Carey
• [BioC] SNPcounts error in SNPlocs.Hsapiens.dbSNP.20110815_0.99.3 (i.e., my attempt to update SNPlocs to dbSNP build 134)   Vincent Carey
• [BioC] more stupid *Ranges questions...   Vincent Carey
• [BioC] [Bioc-devel] XML package downloading problem with bioconductor.org   Vincent Carey
• [BioC] CGHweb and cghFLasso   Vincent Carey
• [BioC] annotate() and genbank and XML   Vincent Carey
• [BioC] course announcement: Bioconductor basics, 24-25 oct 2011, Longwood Medical Area, Boston   Vincent Carey
• [BioC] accessing GenBank features   Vincent Carey
• [BioC] accessing GenBank features   Vincent Carey
• [BioC] Simple GO pie and GOSim install error   Marc Carlson
• [BioC] Simple GO pie and GOSim install error   Marc Carlson
• [BioC] AnnBuilder not available   Marc Carlson
• [BioC] makeTranscriptDbFromBiomart for Arabidopsis thaliana (plants_mart_10)   Marc Carlson
• [BioC] question about oligo package   Benilton Carvalho
• [BioC] error when running paCalls   Benilton Carvalho
• [BioC] error when running paCalls   Benilton Carvalho
• [BioC] DESeq counts normalized option fails   Jane Charlesworth
• [BioC] Bioinformatics Research Scientist Position at University of Georgia   Noah Cohen
• [BioC] EBImage crop failure   Michael Cole
• [BioC] using illuminaMousev2BeadID.bd   Nathalie Conte
• [BioC] HowTo: "Extract masked sequences" / "insert Ns for repeat masked regions"   Cook, Malcolm
• [BioC] HowTo: "Extract masked sequences" / "insert Ns for repeat masked regions"   Cook, Malcolm
• [BioC] lumi combine with controlData   Mark Cowley
• [BioC] illuminaHumanv4 mappings   Mark Cowley
• [BioC] Combining GEOquery with samr or siggenes   Sean Davis
• [BioC] Combining GEOquery with samr or siggenes   Sean Davis
• [BioC] GSEA and edgeR   Sean Davis
• [BioC] problem in read in file with GEOquery library   Sean Davis
• [BioC] Ask for your help   Sean Davis
• [BioC] Detecting Up-Regulated Genes   Sean Davis
• [BioC] Clustering of 30,000+ genes   Sean Davis
• [BioC] About GEO submission of Illumina data   Sean Davis
• [BioC] About GEO submission of Illumina data   Sean Davis
• [BioC] Normalization for use of individual channels from 2-color arrays?   Sean Davis
• [BioC] Normalization for use of individual channels from 2-color arrays?   Sean Davis
• [BioC] Differential Gene Expression Analyses   Sean Davis
• [BioC] normalization microarray   Sean Davis
• [BioC] vsn on vsn   Sean Davis
• [BioC] vsn on vsn   Sean Davis
• [BioC] GEO: Finding up- and down-regulated genes in GDS records   Sean Davis
• [BioC] vsn on vsn   Sean Davis
• [BioC] Biobase use problem   Sean Davis
• [BioC] warnings from getGeo() in Geoquery package   Sean Davis
• [BioC] [Bioc-devel] XML package downloading problem with bioconductor.org   Sean Davis
• [BioC] more stupid *Ranges questions...   Sean Davis
• [BioC] GEOquery and GSE error   Sean Davis
• [BioC] GEOquery and GSE error   Sean Davis
• [BioC] GEOquery and GSE error   Sean Davis
• [BioC] GEOquery and GSE error   Sean Davis
• [BioC] accessing GenBank features   Sean Davis
• [BioC] annotation package for platform GPL2890   Sean Davis
• [BioC] mapping peptides to genome   Sean Davis
• [BioC] GSEs and Platforms   Sean Davis
• [BioC] GSEs and Platforms   Sean Davis
• [BioC] new affy zebrafish genechip cdf   Anthony DiBiase
• [BioC] RNA seq analysis of Arabidopsis genome   Divya, D.
• [BioC] illuminaHumanv4 mappings   Mark Dunning
• [BioC] [BioMart Users] biomaRt returning multiple columns out of order   Steffen Durinck
• [BioC] HTqPCR   Heidi Dvinge
• [BioC] PCR efficiency correction with HTqPCR   Heidi Dvinge
• [BioC] HTqPCR - TLDA analysis doubt   Heidi Dvinge
• [BioC] HTqPCR   Heidi Dvinge
• [BioC] doubt in HTqPCR   Heidi Dvinge
• [BioC] Normalization for use of individual channels from 2-color arrays?   Hari Easwaran
• [BioC] Normalization for use of individual channels from 2-color arrays?   Hari Easwaran
• [BioC] Important Notification   Edelman, Linda
• [BioC] CGHweb and cghFLasso   Chris Fenton
• [BioC] Upgrade bioconductor to version 2.6   Mary Ellen Fitzpatrick
• [BioC] Upgrade bioconductor to version 2.6   Mary Ellen Fitzpatrick
• [BioC] Clustering of 30,000+ genes   Thorsten Forster
• [BioC] Problems loading the "flowStats" package   Juliet Frederiksen
• [BioC] Detecting Up-Regulated Genes   Freudenberg, Johannes (NIH/NIEHS) [E]
• [BioC] annotation package for platform GPL2890   Freudenberg, Johannes (NIH/NIEHS) [E]
• [BioC] annotation package for platform GPL2890   Freudenberg, Johannes (NIH/NIEHS) [E]
• [BioC] [question] integration of microarray data from different sources in limma package   Freudenberg, Johannes (NIH/NIEHS) [E]
• [BioC] Problems loading the "flowStats" package   Stephan Fuhrmann
• [BioC] GSEA and edgeR   Iain Gallagher
• [BioC] GSEA and edgeR   Iain Gallagher
• [BioC] GSEA and edgeR   Iain Gallagher
• [BioC] conversion of geneset species ID   Iain Gallagher
• [BioC] conversion of geneset species ID   Iain Gallagher
• [BioC] mis-matched gene symbols and entrez ID in biomaRt   Iain Gallagher
• [BioC] conversion of geneset species ID   Iain Gallagher
• [BioC] goseq analysis - extracting list of my genes which are DE in the enriched GO category   Iain Gallagher
• [BioC] arrayQuality - maQualityPlots - Error: duplicate switch defaults: 'list(dev =...' and ''   Ignacio Lopez De Ullibarri Galparsoro
• [BioC] missing value where TRUE/FALSE needed (metaArray)   Debashis Ghosh
• [BioC] R: R: Probe-level analysis of exon arrays using xps   Lavorgna Giovanni
• [BioC] R: R: R: Probe-level analysis of exon arrays using xps   Lavorgna Giovanni
• [BioC] I: R: R: R: Probe-level analysis of exon arrays using xps   Lavorgna Giovanni
• [BioC] R: R: R: R: R: Probe-level analysis of exon arrays using xps   Lavorgna Giovanni
• [BioC] ShortRead error when reading BAM file   Alex Gutteridge
• [BioC] ShortRead error when reading BAM file   Alex Gutteridge
• [BioC] ShortRead error when reading BAM file   Alex Gutteridge
• [BioC] collapseRows function   Alex Gutteridge
• [BioC] collapseRows function   Alex Gutteridge
• [BioC] vsn on vsn   Dr Balazs Gyorffy
• [BioC] [Bioc-devel] XML package downloading problem with bioconductor.org   Lianyi Han
• [BioC] biocLite   Kasper Daniel Hansen
• [BioC] biocLite   Kasper Daniel Hansen
• [BioC] biocLite   Kasper Daniel Hansen
• [BioC] installing Rgraphviz under CentOS 5.6   Kasper Daniel Hansen
• [BioC] biomaRt returning multiple columns out of order   Richard Hayes
• [BioC] Annotation for Illumina Mouse Ref 8 v2   Andreas Heider
• [BioC] DNS problem with bioconductor.org   David Henderson
• [BioC] import DOT (GraphViz) into Cytoscape   Hooiveld, Guido
• [BioC] import DOT (GraphViz) into Cytoscape   Hooiveld, Guido
• [BioC] right normalization?   Hooiveld, Guido
• [BioC] import DOT (GraphViz) into Cytoscape   Hooiveld, Guido
• [BioC] gcrma failed on mouse Gene 1.0 ST array   Hooiveld, Guido
• [BioC] Agilent G4131F annotatin package   Jing Huang
• [BioC] Agilent G4131F annotatin package   Jing Huang
• [BioC] fit=lmFit limma package   Jing Huang
• [BioC] SPIA package   Jing Huang
• [BioC] fit=lmFit limma package   Jing Huang
• [BioC] SPIA package   Jing Huang
• [BioC] SPIA package   Jing Huang
• [BioC] annotation package for platform GPL2890   Jing Huang
• [BioC] annotation package for platform GPL2890   Jing Huang
• [BioC] annotation package for platform GPL2890   Jing Huang
• [BioC] annotation package for platform GPL2890   Jing Huang
• [BioC] EBImage crop failure   Wolfgang Huber
• [BioC] fit=lmFit limma package   Wolfgang Huber
• [BioC] array names in arrayQualityMetrics report   Wolfgang Huber
• [BioC] array names in arrayQualityMetrics report   Wolfgang Huber
• [BioC] Advanced Course R Programming and Development - EMBL Heidelberg - 28.-29. November 2011   Wolfgang Huber
• [BioC] Analysing RNA-Seq data using DESeq package   Wolfgang Huber
• [BioC] Analysing RNA-Seq data using DESeq package   Wolfgang Huber
• [BioC] DEXSeq package   Wolfgang Huber
• [BioC] RNA seq analysis of Arabidopsis genome   Wolfgang Huber
• [BioC] Visualizing pre- and post-normalization for single-colour arrays   Wolfgang Huber
• [BioC] Can I use EdgeR to analyse Bulk segregant studies based on markers generated using Illumina generated tag counts   Wolfgang Huber
• [BioC] arrayQualityMetrics and NChannelSets   Wolfgang Huber
• [BioC] right normalization?   Wolfgang Huber
• [BioC] using vsn to normalize protein array data   Wolfgang Huber
• [BioC] Postdoctoral positions at EMBL   Wolfgang Huber
• [BioC] arrayQualityMetrics and NChannelSets   Wolfgang Huber
• [BioC] Problem to store p-value of anova() method   Stefan McKinnon Høj-Edwards
• [BioC] question about oligo package   Irene Ibañez
• [BioC] Reminder about your invitation from Lufei Hu   Lufei Hu (LinkedIn Invitations)
• [BioC] shift function (GenomicRanges, IRanges), issue with negative start values and circular DNA   Ivanek, Robert
• [BioC] shift function (GenomicRanges, IRanges), issue with negative start values and circular DNA   Ivanek, Robert
• [BioC] Problem installing Rsamtools   Kathryn Iverson
• [BioC] Problem installing Rsamtools   Kathryn Iverson
• [BioC] Problem installing Rsamtools   Kathryn Iverson
• [BioC] [Bioc-sig-seq] first remove low quality or adaptor   Harris A. Jaffee
• [BioC] Limma analysis questions   Martin Janssen
• [BioC] Problems loading the "flowStats" package   Jiang, Mike
• [BioC] [BioMart Users] biomaRt returning multiple columns out of order   Arek Kasprzyk
• [BioC] Analysing RNA-Seq data using DESeq package   Kayilai, Suryavadhan (MU-Student)
• [BioC] Analysing RNA-Seq data using DESeq package   Kayilai, Suryavadhan (MU-Student)
• [BioC] Error in colSums(counts) : 'x' must be numeric   Khan, Saad M. (MU-Student)
• [BioC] Rgraphviz Installation Issue   Konis Kjell
• [BioC] Help needed with topGene function of RankProd package   Gaurav Kumar
• [BioC] question on DEXSeq package   Sulev Kõks
• [BioC] shift function (GenomicRanges, IRanges), issue with negative start values and circular DNA   Michael Lawrence
• [BioC] shift function (GenomicRanges, IRanges), issue with negative start values and circular DNA   Michael Lawrence
• [BioC] shift function (GenomicRanges, IRanges), issue with negative start values and circular DNA   Michael Lawrence
• [BioC] more stupid *Ranges questions...   Michael Lawrence
• [BioC] more stupid *Ranges questions...   Michael Lawrence
• [BioC] rtracklayer::liftOver ordering   Michael Lawrence
• [BioC] DESEQ problem   Dawei Li
• [BioC] DESEQ problem   Dawei Li
• [BioC] error in estimateVarianceFunctions   Dawei Li
• [BioC] process one color microarray   Yong Li
• [BioC] gcrma failed on mouse Gene 1.0 ST array   Yupu Liang
• [BioC] Problems loading the "flowStats" package   Steve Lianoglou
• [BioC] Help needed with topGene function of RankProd package   Steve Lianoglou
• [BioC] mis-matched gene symbols and entrez ID in biomaRt   Steve Lianoglou
• [BioC] strand consistency with readAligned, coverage and transcriptsBy   Steve Lianoglou
• [BioC] Analysing RNA-Seq data using DESeq package   Steve Lianoglou
• [BioC] DNS problem with bioconductor.org   Steve Lianoglou
• [BioC] [Bioc-devel] XML package downloading problem with bioconductor.org   Steve Lianoglou
• [BioC] DESEQ problem   Steve Lianoglou
• [BioC] more stupid *Ranges questions...   Steve Lianoglou
• [BioC] error in estimateVarianceFunctions   Steve Lianoglou
• [BioC] DNS problem with bioconductor.org   Philip Lijnzaad
• [BioC] [Bioc-devel] DNS problem with bioconductor.org   Philip Lijnzaad
• [BioC] XML package downloading problem with bioconductor.org   Liu,Bin
• [BioC] [Bioc-devel] XML package downloading problem with bioconductor.org   Liu,Bin
• [BioC] [Bioc-devel] XML package downloading problem with bioconductor.org   Liu,Bin
• [BioC] [Bioc-devel] XML package downloading problem with bioconductor.org   Liu,Bin
• [BioC] DEXSeq package   Liu,Bin
• [BioC] Simple GO pie and GOSim install error   Olivier Lucas
• [BioC] Agilent G4131F annotatin package   MacDonald, James
• [BioC] process one color microarray   MacDonald, James
• [BioC] new affy zebrafish genechip cdf   MacDonald, James
• [BioC] Differential Gene expression analysis help   James W. MacDonald
• [BioC] Problem_retrieving raw dataset from CEL files   James W. MacDonald
• [BioC] Map GO terms to Uniprot from org.Hs.eg   James W. MacDonald
• [BioC] Problem_retrieving raw dataset from CEL files   James W. MacDonald
• [BioC] how to get probe ids??   James W. MacDonald
• [BioC] process one color microarray   James W. MacDonald
• [BioC] process one color microarray   James W. MacDonald
• [BioC] question about xvfb-run GeneAnswers   James W. MacDonald
• [BioC] collapseRows function   Alyaa Mahmoud
• [BioC] collapseRows function   Alyaa Mahmoud
• [BioC] PCR efficiency correction with HTqPCR   Max Mariasegaram
• [BioC] Duplicated Gene IDs - averaging   Aleš Maver
• [BioC] fRMA error when using exprs()   Matthew McCall
• [BioC] Bioconductor Digest, Vol 102, Issue 29   Davis McCarthy
• [BioC] Bioconductor European Developers' Workshop, Manchester 2011   Crispin Miller
• [BioC] European Developers's Workshop 2011   Crispin Miller
• [BioC] limma for spectral counts   Amin Moghaddasi
• [BioC] conversion of geneset species ID   Martin Morgan
• [BioC] conversion of geneset species ID   Martin Morgan
• [BioC] "aggregate" function in R give non-unique values   Martin Morgan
• [BioC] Course: Introduction to R / Bioconductor for Sequence Analysis, October 17-18   Martin Morgan
• [BioC] Course: Introduction to R / Bioconductor for Sequence Analysis, October 17-18   Martin Morgan
• [BioC] Map GO terms to Uniprot from org.Hs.eg   Martin Morgan
• [BioC] ShortRead error when reading BAM file   Martin Morgan
• [BioC] more stupid *Ranges questions...   Martin Morgan
• [BioC] ShortRead error when reading BAM file   Martin Morgan
• [BioC] arrayQuality - maQualityPlots - Error: duplicate switch defaults: 'list(dev =...' and ''   Martin Morgan
• [BioC] Biobase use problem   Martin Morgan
• [BioC] ShortRead error when reading BAM file   Martin Morgan
• [BioC] Problem installing Rsamtools   Martin Morgan
• [BioC] accessing GenBank features   Martin Morgan
• [BioC] Problem installing Rsamtools   Martin Morgan
• [BioC] questions about DESeq package: estimateSizeFactors() function   Sara Nadaf
• [BioC] maSigPro and "vars" argument   Mª José Nueda
• [BioC] maSigPro and "vars" argument   Mª José Nueda
• [BioC] How to create annotation package for not a supported organism   Valerie Obenchain
• [BioC] rsamtools scanBcf segfault   Valerie Obenchain
• [BioC] Problems creating topGOdata object!   Valerie Obenchain
• [BioC] Problems creating topGOdata object!   Valerie Obenchain
• [BioC] error when running paCalls   Valerie Obenchain
• [BioC] error when running paCalls   Valerie Obenchain
• [BioC] countGenomicOverlaps output   Valerie Obenchain
• [BioC] installing Rgraphviz under CentOS 5.6   Ou, Jianhong
• [BioC] installing Rgraphviz under CentOS 5.6   Ou, Jianhong
• [BioC] installing Rgraphviz under CentOS 5.6   Ou, Jianhong
• [BioC] installing Rgraphviz under CentOS 5.6   Ou, Jianhong
• [BioC] installing Rgraphviz under CentOS 5.6   Ou, Jianhong
• [BioC] question about xvfb-run GeneAnswers   Ou, Jianhong
• [BioC] question about xvfb-run GeneAnswers   Ou, Jianhong
• [BioC] SNPcounts error in SNPlocs.Hsapiens.dbSNP.20110815_0.99.3 (i.e., my attempt to update SNPlocs to dbSNP build 134)   Hervé Pagès
• [BioC] more stupid *Ranges questions...   Hervé Pagès
• [BioC] HowTo: "Extract masked sequences" / "insert Ns for repeat masked regions"   Hervé Pagès
• [BioC] Problem installing Rsamtools   Hervé Pagès
• [BioC] HowTo: "Extract masked sequences" / "insert Ns for repeat masked regions"   Hervé Pagès
• [BioC] get chr position for a batch of human SNPs   Hervé Pagès
• [BioC] get chr position for a batch of human SNPs   Hervé Pagès
• [BioC] get chr position for a batch of human SNPs   Hervé Pagès
• [BioC] [Bioc-sig-seq] first remove low quality or adaptor   Hervé Pagès
• [BioC] get chr position for a batch of human SNPs   Hervé Pagès
• [BioC] EBImage crop failure   Gregoire Pau
• [BioC] plgem for spectral counts   Norman Pavelka
• [BioC] Help on PLGEM R Package Data Import   Norman Pavelka
• [BioC] Fwd: plgem for spectral counts   Norman Pavelka
• [BioC] Fwd: Help on PLGEM R Package Data Import   Norman Pavelka
• [BioC] Help on PLGEM R Package Data Import   Norman Pavelka
• [BioC] Help on PLGEM R Package Usage   Norman Pavelka
• [BioC] Help on PLGEM R Package Usage   Norman Pavelka
• [BioC] Help on PLGEM R Package Usage   Norman Pavelka
• [BioC] Help on PLGEM R Package Usage   Norman Pavelka
• [BioC] Help on PLGEM R Package Usage   Norman Pavelka
• [BioC] Problem to store p-value of anova() method   Gopal Peddinti
• [BioC] ask for your help about some questions of using edgeR   Zhenling Peng
• [BioC] ask for your help about some questions of using edgeR   Zhenling Peng
• [BioC] ask for your help about some questions of using edgeR   Zhenling Peng
• [BioC] error in estimateVarianceFunctions   Francois Pepin
• [BioC] edgeR on microRNA data   Helena Persson
• [BioC] About GEO submission of Illumina data   Yu Leng Phua
• [BioC] About GEO submission of Illumina data by lumi   Yu Leng Phua
• [BioC] Help on PLGEM R Package Usage   Wu Qi
• [BioC] Help on PLGEM R Package Usage   Wu Qi
• [BioC] Help on PLGEM R Package Usage   Wu Qi
• [BioC] Help on PLGEM R Package Usage   Wu Qi
• [BioC] mis-matched gene symbols and entrez ID in biomaRt   Wendy Qiao
• [BioC] "aggregate" function in R give non-unique values   Wendy Qiao
• [BioC] "aggregate" function in R give non-unique values   Wendy Qiao
• [BioC] Rgraphviz Installation Issue   Jayanth Rajan
• [BioC] Rgraphviz Installation Issue   Jayanth Rajan
• [BioC] normalization microarray   Paz Tapia Ramirez
• [BioC] process one color microarray   Paz Tapia Ramirez
• [BioC] process one color microarray   Paz Tapia Ramirez
• [BioC] process one color microarray   Paz Tapia Ramirez
• [BioC] process one color microarray   Paz Tapia Ramirez
• [BioC] makeContrast in limma package   Paz Tapia Ramirez
• [BioC] matrix in microarray processing   Paz Tapia Ramirez
• [BioC] load single-channel microarray   Paz Tapia Ramirez
• [BioC] process one color microarray   Paz Tapia Ramirez
• [BioC] arrayQualityMetrics and NChannelSets   Tim Rayner
• [BioC] DEXSeq package   Alejandro Reyes
• [BioC] Annotation for Mouse Affy SNP arrays (MOUSEDIVm520650)?   Daniel Rico Rodriguez
• [BioC] edgeR-DeGseq   CTSI Consultation Service
• [BioC] Biobase use problem   Ram H. Sharma
• [BioC] edgeR   Jim Silverton
• [BioC] lumi and/or beadarray for getting beadSummary   Mike Smith
• [BioC] GSEA and edgeR   Gordon K Smyth
• [BioC] edgeR   Gordon K Smyth
• [BioC] GSEA and edgeR   Gordon K Smyth
• [BioC] edgeR-DeGseq   Gordon K Smyth
• [BioC] fit=lmFit limma package   Gordon K Smyth
• [BioC] edgeR : How to associated trait with DE?   Gordon K Smyth
• [BioC] edgeR : How to associated trait with DE?   Gordon K Smyth
• [BioC] p.adjust BH generates duplicate values   Gordon K Smyth
• [BioC] ask for your help about some questions of using edgeR   Gordon K Smyth
• [BioC] makeContrast in limma package   Gordon K Smyth
• [BioC] edgeR : How to associated trait with DE?   Gordon K Smyth
• [BioC] input agilent single-channel data (using limma package)   Gordon K Smyth
• [BioC] mis-matched gene symbols and entrez ID in biomaRt   Srinivas M. Srikanth
• [BioC] Differential Gene expression analysis help   Srinivas M. Srikanth
• [BioC] Map GO terms to Uniprot from org.Hs.eg   Srinivas M. Srikanth
• [BioC] mapping peptides to genome   Srinivas M. Srikanth
• [BioC] mapping peptides to genome   Srinivas M. Srikanth
• [BioC] question for you on SPIA package   Tarca, Adi
• [BioC] Do you maintain a public Bioconductor mirror?   Dan Tenenbaum
• [BioC] huex10stv2cdf   Dan Tenenbaum
• [BioC] Problem loading Rgraphviz   Dan Tenenbaum
• [BioC] [Bioc-devel] DNS problem with bioconductor.org   Dan Tenenbaum
• [BioC] import DOT (GraphViz) into Cytoscape   Dan Tenenbaum
• [BioC] import DOT (GraphViz) into Cytoscape   Dan Tenenbaum
• [BioC] biocLite   Dan Tenenbaum
• [BioC] biocLite   Dan Tenenbaum
• [BioC] Posting to the Bioconductor list without subscribing   Dan Tenenbaum
• [BioC] accessing GenBank features   Gerhard Thallinger
• [BioC] Clustering of 30,000+ genes   Tim Triche, Jr.
• [BioC] SNPcounts error in SNPlocs.Hsapiens.dbSNP.20110815_0.99.3 (i.e., my attempt to update SNPlocs to dbSNP build 134)   Tim Triche, Jr.
• [BioC] SNPcounts error in SNPlocs.Hsapiens.dbSNP.20110815_0.99.3 (i.e., my attempt to update SNPlocs to dbSNP build 134)   Tim Triche, Jr.
• [BioC] SNPcounts error in SNPlocs.Hsapiens.dbSNP.20110815_0.99.3 (i.e., my attempt to update SNPlocs to dbSNP build 134)   Tim Triche, Jr.
• [BioC] more stupid *Ranges questions...   Tim Triche, Jr.
• [BioC] more stupid *Ranges questions...   Tim Triche, Jr.
• [BioC] more stupid *Ranges questions...   Tim Triche, Jr.
• [BioC] more stupid *Ranges questions...   Tim Triche, Jr.
• [BioC] more stupid *Ranges questions...   Tim Triche, Jr.
• [BioC] more stupid *Ranges questions...   Tim Triche, Jr.
• [BioC] get chr position for a batch of human SNPs   Tim Triche, Jr.
• [BioC] edgeR : How to associated trait with DE?   Sermsawat Tunlaya-anukit
• [BioC] edgeR : How to associated trait with DE?   Sermsawat Tunlaya-anukit
• [BioC] edgeR : How to associated trait with DE?   Sermsawat Tunlaya-anukit
• [BioC] Bioconductor Digest, Vol 102, Issue 29   Sonika Tyagi
• [BioC] Tenure-track position, Department of Statistics, Purdue University   Olga Vitek
• [BioC] Clustering of 30,000+ genes   January Weiner
• [BioC] using vsn to normalize protein array data   Jabez Wilson
• [BioC] goseq analysis - extracting list of my genes which are DE in the enriched GO category   Helen Wright
• [BioC] Easy way to map Exon array probes to coordinates?   Hollis Wright
• [BioC] Problem when I install shortread   Wei Wu
• [BioC] huex10stv2cdf   YBao
• [BioC] annotate() and genbank and XML   Andrew Yee
• [BioC] annotate() and genbank and XML   Andrew Yee
• [BioC] accessing GenBank features   Andrew Yee
• [BioC] accessing GenBank features   Andrew Yee
• [BioC] accessing GenBank features   Andrew Yee
• [BioC] p.adjust BH generates duplicate values   David Young
• [BioC] p.adjust BH Question   David Young
• [BioC] RNA seq analysis of Arabidopsis genome   Matthew Young
• [BioC] Position Assistant Professor Bioinformatics   Martin Zenke
• [BioC] cghMCR package:Is it possible to find MCR by not usingDNAcopy object?   Jianhua Zhang
• [BioC] [Bioc-sig-seq] ChIPpeakAnno annotatePeakInBatch problems in R2.13/ChIPpeakAnno_1.8.0 and R2.13/ChIPpeakAnno_2.0.2   Zhu, Lihua (Julie)
• [BioC] [Bioc-sig-seq] ChIPpeakAnno annotatePeakInBatch problems in R2.13/ChIPpeakAnno_1.8.0 and R2.13/ChIPpeakAnno_2.0.2   Zhu, Lihua (Julie)
• [BioC] makeTranscriptDbFromBiomart for Arabidopsis thaliana (plants_mart_10)   annaick.carles
• [BioC] makeTranscriptDbFromBiomart for Arabidopsis thaliana (plants_mart_10)   annaick.carles
• [BioC] How to create annotation package for not a supported organism   alogmail2 at aol.com
• [BioC] [simpleaffy] maizecdf.qcdef   mjonczyk at biol.uw.edu.pl
• [BioC] [simpleaffy] maizecdf.qcdef   mjonczyk at biol.uw.edu.pl
• [BioC] R: R: Probe-level analysis of exon arrays using xps   cstrato
• [BioC] R: R: R: Probe-level analysis of exon arrays using xps   cstrato
• [BioC] R: R: R: Probe-level analysis of exon arrays using xps   cstrato
• [BioC] R: R: R: R: Probe-level analysis of exon arrays using xps   cstrato
• [BioC] [XPS] detection call using MAS5 and DABG   cstrato
• [BioC] [XPS] integrating data processed outside of XPS into the tree   cstrato
• [BioC] [XPS] integrating data processed outside of XPS into the tree   cstrato
• [BioC] Easy way to map Exon array probes to coordinates?   cstrato
• [BioC] Lumi problem   de With, Jytte
• [BioC] Can I use EdgeR to analyse Bulk segregant studies based on markers generated using Illumina generated tag counts   josquin.tibbits at dpi.vic.gov.au
• [BioC] maSigPro and "vars" argument   andrea.grilli at ior.it
• [BioC] compare IC50 curves   andrea.grilli at ior.it
• [BioC] maSigPro and "vars" argument   andrea.grilli at ior.it
• [BioC] Customize normalization on specific time series experiment?   andrea.grilli at ior.it
• [BioC] right normalization?   andrea.grilli at ior.it
• [BioC] R functions   viritha k
• [BioC] cghMCR package:Is it possible to find MCR by not using DNAcopy object?   viritha k
• [BioC] unique human genomic regions   km
• [BioC] error when running paCalls   marco
• [BioC] error when running paCalls   marco
• [BioC] Duplicated Gene IDs - averaging   mjonczyk
• [BioC] Duplicated Gene IDs - averaging   mjonczyk
• [BioC] missing value where TRUE/FALSE needed (metaArray)   mjonczyk
• [BioC] missing value where TRUE/FALSE needed (metaArray)   mjonczyk
• [BioC] missing value where TRUE/FALSE needed (metaArray)   mjonczyk
• [BioC] 4 PhD positions in cancer computational biology   mattia pelizzola
• [BioC] [Bioc-sig-seq] first remove low quality or adaptor   wang peter
• [BioC] [Bioc-sig-seq] first remove low quality or adaptor   wang peter
• [BioC] mis-matched gene symbols and entrez ID in biomaRt   vasu punj
• [BioC] array names in arrayQualityMetrics report   rchavez
• [BioC] array names in arrayQualityMetrics report   rchavez
• [BioC] edgeR-DeGseq   rakhs shit
• [BioC] [XPS] detection call using MAS5 and DABG   thomas sierocinski
• [BioC] [XPS] integrating data processed outside of XPS into the tree   thomas sierocinski
• [BioC] [XPS] integrating data processed outside of XPS into the tree   thomas sierocinski
• [BioC] [XPS] integrating data processed outside of XPS into the tree   thomas sierocinski
• [BioC] how to get probe ids??   anand m t
• [BioC] strand consistency with readAligned, coverage and transcriptsBy   tefina
• [BioC] Problems creating topGOdata object!   gabriel teku
• [BioC] Problem loading Rgraphviz   ckingsley at tgen.org
• [BioC] Visualizing pre- and post-normalization for single-colour arrays   mrjmorri at ucalgary.ca
• [BioC] Visualizing pre- and post-normalization for single-colour arrays   mrjmorri at ucalgary.ca
• [BioC] population-by-environment interaction term in LIMMA   mrjmorri at ucalgary.ca
• [BioC] population-by-environment interaction term in LIMMA   mrjmorri at ucalgary.ca
• [BioC] Packages for snp, CNV data   carol white
• [BioC] get chr position for a batch of human SNPs   shirley zhang
• [BioC] get chr position for a batch of human SNPs   shirley zhang
• [BioC] get chr position for a batch of human SNPs   shirley zhang
• [BioC] get chr position for a batch of human SNPs   shirley zhang
• [BioC] get chr position for a batch of human SNPs   shirley zhang
• [BioC] a question about input agilent single-channel data to R ( using limma package). Thanks for your kind help.   liuyang zhao
• [BioC] Ask for your help   马淑杰
• [BioC] [question] integration of microarray data from different sources in limma package   이선재

Last message date: Fri Sep 30 23:51:31 CEST 2011
Archived on: Mon Oct 3 18:28:34 CEST 2011

• Messages sorted by: [ thread ] [ subject ] [ date ]
• More info on this list...