[BioC] Problems loading the "flowStats" package
Stephan Fuhrmann
stephan.fuhrmann at charite.de
Tue Sep 20 21:20:30 CEST 2011
dear all,
i encountered a problem when trying to use the flowStats package.
i found the same error described, but there was no solution:
On Mon, Sep 5, 2011 at 6:03 PM, Juliet Frederiksen
<juliet.frederiksen at ...> wrote:
> Hi everyone,
>
> I am a masters student working with flow cytometry data analysis, and while
> working on my data I came across the "flowStats" package, but I am
unable to
> load it in R.
>
>>library("flowStats")
> Error : object 'data2fd' is not exported by 'namespace:fda'
> Error: package/namespace load failed for 'flowStats'
>
> When I looked into it some more, when looking into the fda package,
there is
> a function called 'Data2fd'.
> When having a look at the NAMESPACE file of "flowStats":
>
> importFrom(fda, create.bspline.basis, data2fd, eval.fd, fdPar,
> landmarkreg)
>
> So I tired to change the "flowStats" NAMESPACE file to:
>
> importFrom(fda, create.bspline.basis, Data2fd, eval.fd, fdPar,
> landmarkreg)
> but this did not help...
>
> Any suggestions as to what I should do?
>
i downloaded the flowStats_1.10.0 mac binary from bioconductor.org. i
checked the versions of the dependencies, which seem to be okay.
Any suggestion how i can fix this problem.
i attach you the console and sessionInfo:
thanks a lot,
stephan
sessionInfo()
R version 2.13.1 (2011-07-08)
Platform: i386-apple-darwin9.8.0/i386 (32-bit)
locale:
[1] de_DE.UTF-8/de_DE.UTF-8/C/C/de_DE.UTF-8/de_DE.UTF-8
attached base packages:
[1] splines grid stats graphics grDevices utils datasets
methods base
other attached packages:
[1] cluster_1.14.0 mvoutlier_1.9.3 robCompositions_1.5.0
car_2.0-11
[5] survival_2.36-9 nnet_7.3-1 compositions_1.10-1
energy_1.3-0
[9] MASS_7.3-14 boot_1.3-2 tensorA_0.36
rgl_0.92.798
[13] fda_2.2.7 zoo_1.7-4 flowCore_1.18.0
rrcov_1.3-01
[17] pcaPP_1.9-44 mvtnorm_0.9-9991 robustbase_0.7-6
Biobase_2.12.2
[21] flowType_0.99.4 Rgraphviz_1.30.1 graph_1.30.0
loaded via a namespace (and not attached):
[1] feature_1.2.8 flowClust_2.10.0 flowMeans_1.4.0 flowMerge_2.0.3
KernSmooth_2.23-6
[6] ks_1.8.2 lattice_0.19-33 sfsmisc_1.0-14 stats4_2.13.1
tools_2.13.1
> library(flowStats)
Error : Objekt data2fd ist nicht von 'namespace:fda' exportiert
Fehler: Laden von Paket/Namensraum für 'flowStats' fehlgeschlagen
> traceback()
2: stop(gettextf("package/namespace load failed for '%s'", package),
call. = FALSE, domain = NA)
1: library(flowStats)
More information about the Bioconductor
mailing list