[BioC] [Bioc-sig-seq] first remove low quality or adaptor

[Harris A. Jaffee]

 > showMethods(which.isMatchingStartingAt, includeDefs=TRUE)

and then

 > Biostrings:::.matchPatternAt

 From there, you will need the Biostrings source, in particular

	Biostrings/src/lowlevel_matching.c

On Sep 26, 2011, at 11:04 PM, wang peter wrote:

> dear Dr. Hervé Pagès
> and do you know how to read the c source code of trimLRPatterns
> here is the hierachy of that function
> trimLRPatterns
> showMethods("trimLRPatterns")
> Biostrings:::.XStringSet.trimLRPatterns
> Biostrings:::.computeTrimStart or Biostrings:::.computeTrimEnd
> which.isMatchingStartingAt
> but i donot know how to continue to show its called functions?
> thx
> shan gao
>
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