[BioC] array names in arrayQualityMetrics report

[Wolfgang Huber]

Dear Ricardo

thanks for your feedback. I am not quite sure what your problem is. 
Here's a report produced by a recent version of arrayQualityMetrics 
http://www-huber.embl.de/users/whuber/bioc-list/110916/Report_for_nCCl4_with_RIN/
(the code for making it is in the package vignette).

The report section "Array metadata and outlier detection overview" gives 
the mapping between sample names (cel file names) and numbers. Note that 
by clicking on the section title you can expand or collapse the table.

The sample names (or cel file names) can be very long and would mess up 
most of the plots.

Do this address your problem? Otherwise, can you precisify it?

	Wolfgang


Sep/14/11 5:06 PM, rchavez scripsit::
> Hello,
>
> The latest version of arrayQualityMetrics names the arrays "1, 2, 3...".
> How do I know which number corresponds to which .cel file? In previous
> versions the name was the .cel file name. Why the change?
>
> ---
> Dr. Ricardo A. Chávez Montes
> Laboratorio Nacional de Genomica para la Biodiversidad
> CINVESTAV-IPN
> Km. 9.6 Libramiento Norte, Carretera Irapuato-León,
> A.P. 629, CP 36821, Irapuato, Guanajuato,
> Mexico
> Phone: +52 (462) 1663000 ext. 3011
> Fax: +52 (462) 6245846
> rchavez at langebio.cinvestav.mx
>
>
>


-- 


Wolfgang Huber
EMBL
http://www.embl.de/research/units/genome_biology/huber