[BioC] accessing GenBank features
Gerhard Thallinger
Gerhard.Thallinger at tugraz.at
Thu Sep 22 09:45:01 CEST 2011
Hi Andrew,
> Thinking about this more broadly, is there a Bioconductor package
> that lets you parse out the different features listed in a
> GenBank feature, somewhat akin to this:
> http://www.bioperl.org/wiki/HOWTO:Feature-Annotation
You may want to take a look into the genoPlotR package from CRAN.
It allows you to read GenBank files directly and to extract your
features of interest from the resulting data.frame.
Hth
Gerhard
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Dr. Gerhard Thallinger E-mail: Gerhard.Thallinger at tugraz.at
Institute for Genomics and Bioinformatics Web: http://genome.tugraz.at
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