September 2005 Archives by author

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Starting: Thu Sep 1 04:22:24 CEST 2005
Ending: Fri Sep 30 23:00:12 CEST 2005
Messages: 273

• [BioC] GOstats error messages   Ting-Yuan Liu (FHCRC)
• [BioC] problem with package version of rat2302 1.8.5   Ting-Yuan Liu (FHCRC)
• [BioC] limma makeContrasts error   michael watson (IAH-C)
• [BioC] Dealing with technical replication with a common reference design   michael watson (IAH-C)
• [BioC] Dealing with technical replication with a common reference design   michael watson (IAH-C)
• [BioC] another kooperberg question   michael watson (IAH-C)
• [BioC] another kooperberg question   michael watson (IAH-C)
• [BioC] Normalisation knocks my "housekeeping genes" off!   michael watson (IAH-C)
• [BioC] Normalisation knocks my "housekeeping genes" off!   michael watson (IAH-C)
• [BioC] problem reading GenePix files with .XLS extension   michael watson (IAH-C)
• [BioC] Annotation metadata for Agilent arrays   Aedin
• [BioC] Annotation metadata for Agilent arrays: Summary of replies   Aedin
• [BioC] clustering   Marta Agudo
• [BioC] installing bioconductor   Altiner, Ahmet (NIH/NCI) [G]
• [BioC] installing bioconductor   Altiner, Ahmet (NIH/NCI) [G]
• [BioC] What wrong with my data using LIMMA   Naomi Altman
• [BioC] What wrong with my data using LIMMA   Naomi Altman
• [BioC] Almost inexisting overlap of diff. expr. genes found when comparing mas5 / rma   Naomi Altman
• [BioC] 4-color microarrays   Naomi Altman
• [BioC] Conference Announcement - Bacterial Gastroenteritis 2006 (& 3 Other Research Meetings)   Anthony F. England, Ph.D.
• [BioC] ArrayQuest - A BioC Process Controller   Scott Argraves
• [BioC] Venn's diagram including size   Alice Le Bars
• [BioC] 4-color microarrays   Henrik Bengtsson
• [BioC] 4-color microarrays   Henrik Bengtsson
• [BioC] limma layout query (genepix GAL file)   Dave Berger
• [BioC] GOHyperG for KEGG   Dick Beyer
• [BioC] want to compare hgu133a and hgu133plus2   Dick Beyer
• [BioC] LIMMA No residual using rmaPLM   Ben Bolstad
• [BioC] LIMMA No residual using rmaPLM   Ben Bolstad
• [BioC] LIMMA No residual using rmaPLM   Ben Bolstad
• [BioC] ArrayAssist vs. Bioconductor   Ben Bolstad
• [BioC] CEL file conversion for custom CDF arrays gives segmentation fault when run   Ben Bolstad
• [BioC] Replictes quality   Ben Bolstad
• [BioC] LIMMA lmscFit: difference between linear models   Koen Bossers
• [BioC] LIMMA lmscFit: difference between linear models   Koen Bossers
• [BioC] Triplicate printing and limma   Brooke-Powell, Elizabeth
• [BioC] Triplicate printing and limma   Brooke-Powell, Elizabeth
• [BioC] Triplicate printing and limma   Brooke-Powell, Elizabeth
• [BioC] hgu95av12mix and GCRMA   Sabrina Carpentier
• [BioC] Heatmap - color key & modifying text   Benilton Carvalho
• [BioC] Design and normalization of focused arrays   Vered Caspi
• [BioC] Importing SMD data   Georgia Chan
• [BioC] Importing SMD data   Georgia Chan
• [BioC] Matchprobe package   Wenqiong Chen
• [BioC] How to convert a character string to a variable name?   Ariel Chernomoretz
• [BioC] Installation with package versions?   Ariel Chernomoretz
• [BioC] multiple hexbin plots   Giovanni Coppola
• [BioC] Writing own package description.   Sean Davis
• [BioC] clustering   Sean Davis
• [BioC] canineprobe vs. caninecdf: discrepancy in x,y values   Jenny Drnevich
• [BioC] limma topTable problem   Jenny Drnevich
• [BioC] FDR analyses: minimum number of features   Dupont, William
• [BioC] Query regarding accessing all genes within a BAC   Steffen Durinck
• [BioC] biomaRt gives only NA output   Steffen Durinck
• [BioC] AnnBuilder/ABPkgBuilder   Daniela Eggle
• [BioC] Multifactorial statistics/confounding variables in microarray analysis   Lucchinetti Eliana
• [BioC] limma - read function   Sylvain FORET
• [BioC] The next release of Bioconductor...   Seth Falcon
• [BioC] some experiences and some troubles with GraphAT package   Seth Falcon
• [BioC] Installation with package versions?   Seth Falcon
• [BioC] pamr, samr and RWinEdt conficts - New editor req info   Seth Falcon
• [BioC] installing bioconductor   Seth Falcon
• [BioC] pamr and samr problems with windowsXP - pop-up windows   Seth Falcon
• [BioC] golubEsets package   Seth Falcon
• [BioC] increase R memory   Seth Falcon
• [BioC] warning if pdf of vignette is missing   Seth Falcon
• [BioC] max query length in RdbiPgSQL   Seth Falcon
• [BioC] warning if pdf of vignette is missing   Seth Falcon
• [BioC] (SUMMARY) warning if pdf of vignette is missing   Seth Falcon
• [BioC] GOstats error messages   Seth Falcon
• [BioC] AnnBuilder/ABPkgBuilder   Seth Falcon
• [BioC] warning if pdf of vignette is missing   Seth Falcon
• [BioC] Packaging bioconductor   Seth Falcon
• [BioC] CEL file conversion for custom CDF arrays gives segmentation fault when run   Seth Falcon
• [BioC] Simpleaffy problem   Seth Falcon
• [BioC] Packaging bioconductor   Seth Falcon
• [BioC] problem with package version of rat2302 1.8.5   Seth Falcon
• [BioC] Error:"arrayQuality"   Seth Falcon
• [BioC] technical replicates (different subset repeated on different print runs within experiment)   Margaret Gardiner-Garden
• [BioC] Replicates quality   Marco Gentilini
• [BioC] Replictes quality   Marco Gentilini
• [BioC] installing bioconductor   Robert Gentleman
• [BioC] GOstats error messages   Robert Gentleman
• [BioC] split arrays   Robert Gentleman
• [BioC] split arrays   Robert Gentleman
• [BioC] letters of support   Robert Gentleman
• [BioC] warning if pdf of vignette is missing   Jeff Gentry
• [BioC] ArrayAssist vs. Bioconductor   Bogdan Georgescu
• [BioC] Packaging bioconductor   Giuseppe Ghibò
• [BioC] Packaging bioconductor   Giuseppe Ghibò
• [BioC] Packaging bioconductor   Giuseppe Ghibò
• [BioC] pamr, samr and RWinEdt conficts - New editor req info   Giulio Di Giovanni
• [BioC] pamr, samr and RWinEdt conficts - New editor req info - THANKS   Giulio Di Giovanni
• [BioC] pamr and samr problems with windowsXP - pop-up windows   Giulio Di Giovanni
• [BioC] biomaRt gives only NA output   Goeman, J.J. (MSTAT)
• [BioC] help with bayesian network   Alberto Goldoni
• [BioC] Importing SMD data   Jeremy Gollub
• [BioC] How to convert a character string to a variable name?   Groot, Philip de
• [BioC] How to convert a character string to a variable name?   Groot, Philip de
• [BioC] ArrayAssist vs. Bioconductor   Groot, Philip de
• [BioC] Spot Quality Weights for Agilent arrays   Francesca Guana
• [BioC] rma vs mas5 (gcrma vs plier)   Jeffrey Habig
• [BioC] Please Help on how to install Mapping10K_XBa142 in R.   Kasper Daniel Hansen
• [BioC] equivalent of $this   Kasper Daniel Hansen
• [BioC] Normalisation knocks my "housekeeping genes" off!   Kasper Daniel Hansen
• [BioC] limma MArrayLM subclass question   Cyrus Harmon
• [BioC] limma MArrayLM subclass question   Cyrus Harmon
• [BioC] Triplicate printing and limma   Barry Henderson
• [BioC] Split Arrays   David Henderson
• [BioC] LIMMA: duplicate correlation   Hoen, P.A.C. 't (HKG)
• [BioC] looking for advice on analysis methods   David Horvath
• [BioC] Matchprobe package   Wolfgang Huber
• [BioC] warning if pdf of vignette is missing   Wolfgang Huber
• [BioC] Lymphoma data package   Wolfgang Huber
• [BioC] warning if pdf of vignette is missing   Manuela Hummel
• [BioC] warning if pdf of vignette is missing   Manuela Hummel
• [BioC] warning if pdf of vignette is missing   Manuela Hummel
• [BioC] Please Help on how to install Mapping10K_XBa142 in R.   Rafael Irizarry
• [BioC] Lymphoma data package   Srinivas Iyyer
• [BioC] problem reading GenePix files with .XLS extension   Srinivas Iyyer
• [BioC] problem reading GenePix files with .XLS extension   Srinivas Iyyer
• [BioC] LPE method based on RMA vs. MAS5   Jain, Nitin
• [BioC] incoherence with LPE   Jain, Nitin
• [BioC] Writing an exprSet object to a rda file   Jamain, Adrien J
• [BioC] split arrays   Jamain, Adrien J
• [BioC] wt.fun question   Jianping Jin
• [BioC] golubEsets package   Jianping Jin
• [BioC] golubEsets package   Jianping Jin
• [BioC] limma topTable problem   Jianping Jin
• [BioC] limma topTable problem   Jianping Jin
• [BioC] Writing own package description.   TEXTORIS Julien
• [BioC] equivalent of $this   TEXTORIS Julien
• [BioC] Please Help on how to install Mapping10K_XBa142 in R.   TEXTORIS Julien
• [BioC] Microarray mailling list   TEXTORIS Julien
• [BioC] limma - read function   TEXTORIS Julien
• [BioC] What wrong with my data using LIMMA   TEXTORIS Julien
• [BioC] limma - read function   TEXTORIS Julien
• [BioC] Error:"arrayQuality"   Khan, Sohail
• [BioC] Error:"arrayQuality"   Khan, Sohail
• [BioC] passing character string as an environment arguement   Kimpel, Mark William
• [BioC] GOstats error messages   Kimpel, Mark William
• [BioC] GOstats error messages   Kimpel, Mark William
• [BioC] GOstats error messages   Kimpel, Mark William
• [BioC] GOstats error messages   Kimpel, Mark William
• [BioC] problem with package version of rat2302 1.8.5   Kimpel, Mark William
• [BioC] CEL file conversion for custom CDF arrays gives segmentation fault when run   Chaitanya Kommidi
• [BioC] CEL file conversion for custom CDF arrays gives segmentation fault when run   Chaitanya Kommidi
• [BioC] Microarray mailling list   STKH (Steen Krogsgaard)
• [BioC] [OFF TOPIC] Script/Software to prediction of bacterium promoter element   Marcelo Luiz de Laia
• [BioC] SpotTypes doesn't match   kevin Lin
• [BioC] two pair dye-swap (replicates) conducted in different labs   kevin Lin
• [BioC] two pair dye-swap (replicates) conducted in different labs   kevin Lin
• [BioC] Wrapper of X-tandem into BioC for Proteomics   Simon Lin
• [BioC] clustering   Antoine Lucas
• [BioC] Problem with hgu133a under affylmGUI   Luo, Wen
• [BioC] FW: Question (vennDiagram vs. topTable) for AffylmGUI 1.3.0   Luo, Wen
• [BioC] installing bioconductor   James MacDonald
• [BioC] How to convert a character string to a variable name?   James W. MacDonald
• [BioC] Annotation metadata for Agilent arrays   James W. MacDonald
• [BioC] Writing own package description.   James W. MacDonald
• [BioC] Writing own package description.   James W. MacDonald
• [BioC] pamr, samr and RWinEdt conficts - New editor req info   James W. MacDonald
• [BioC] limma makeContrasts error   James W. MacDonald
• [BioC] Writing an exprSet object to a rda file   James W. MacDonald
• [BioC] Help on mapping10xba142   James W. MacDonald
• [BioC] golubEsets package   James W. MacDonald
• [BioC] Help on mapping10xba142   James W. MacDonald
• [BioC] increase R memory   James W. MacDonald
• [BioC] GOstats error messages   James W. MacDonald
• [BioC] Simpleaffy problem   James W. MacDonald
• [BioC] hgu95av12mix and GCRMA   James W. MacDonald
• [BioC] equivalent of $this   Martin Maechler
• [BioC] ArrayAssist vs. Bioconductor   Bruz Marzolf
• [BioC] [Fwd: Re: Annotation metadata for Agilent arrays]   Morten Mattingsdal
• [BioC] max query length in RdbiPgSQL   William McCoy
• [BioC] max query length in RdbiPgSQL   William McCoy
• [BioC] affymetrix latin square   Crispin Miller
• [BioC] Looking for consultant in Biostatistics   Susan J. Miller
• [BioC] Median-adjusted Standard Deviation   Ewan Mollison
• [BioC] two pair dye-swap (replicates) conducted in different labs   Morten
• [BioC] LIMMA: Technical replication (dye swap) and within-array replicate spots   Pie Muller
• [BioC] LIMMA: Technical replication (dye swap) and within-array replicate spots   Pie Muller
• [BioC] problems with single channel analysis of two-colour arrays   Pie Muller
• [BioC] Limma and Block Effects   Pie Muller
• [BioC] Writing own package description.   Judith Offman
• [BioC] Triplicate printing and limma   Oosting, J. (PATH)
• [BioC] LIMMA No residual using rmaPLM   Ron Ophir
• [BioC] LIMMA No residual using rmaPLM   Ron Ophir
• [BioC] LIMMA No residual using rmaPLM   Ron Ophir
• [BioC] limma makeContrasts error   Georg Otto
• [BioC] maanova error   Georg Otto
• [BioC] Error:"arrayQuality"   Paquet, Agnes
• [BioC] Applicability of PLGEM-based DEG selection   Norman Pavelka
• [BioC] Annotation metadata for Agilent arrays   Francois Pepin
• [BioC] LIMMA lmscFit: difference between linear models   Francois Pepin
• [BioC] LIMMA lmscFit: difference between linear models   Francois Pepin
• [BioC] some experiences and some troubles with GraphAT package   Maria Persico
• [BioC] microarray meeting   Ulrich Pfeffer
• [BioC] About Hopach package   Katherine Pollard
• [BioC] root group in hdf5   Ales Poredos
• [BioC] how to run SAM analysis   Adaikalavan Ramasamy
• [BioC] What wrong with my data using LIMMA   Adaikalavan Ramasamy
• [BioC] how to find out the differentially expressed genes?how to downweight the arrays?   Adaikalavan Ramasamy
• [BioC] two pair dye-swap (replicates) conducted in different labs   Adaikalavan Ramasamy
• [BioC] Lymphoma data package   Adaikalavan Ramasamy
• [BioC] Installation with package versions?   A.J. Rossini
• [BioC] Installation with package versions?   A.J. Rossini
• [BioC] Installation with package versions?   A.J. Rossini
• [BioC] 4-color microarrays   A.J. Rossini
• [BioC] 4-color microarrays   A.J. Rossini
• [BioC] Heatmap - color key & modifying text   Roth, Richard
• [BioC] Matchprobe package   Nathan Salomonis
• [BioC] multiple hexbin plots   Deepayan Sarkar
• [BioC] some experiences and some troubles with GraphAT package   Denise Scholtens
• [BioC] GOHyperG for KEGG   Shi, Tao
• [BioC] GOHyperG for KEGG   Shi, Tao
• [BioC] GOHyperG for KEGG   Shi, Tao
• [BioC] job hunting   Weiwei Shi
• [BioC] What wrong with my data using LIMMA   Gordon Smyth
• [BioC] What wrong with my data using LIMMA   Gordon Smyth
• [BioC] LIMMA No residual using rmaPLM   Gordon Smyth
• [BioC] SpotTypes doesn't match   Gordon Smyth
• [BioC] Dealing with technical replication with a common reference design   Gordon Smyth
• [BioC] SpotTypes doesn't match   Gordon Smyth
• [BioC] Design and normalization of focused arrays   Gordon Smyth
• [BioC] limma MArrayLM subclass question   Gordon Smyth
• [BioC] limma MArrayLM subclass question   Gordon Smyth
• [BioC] limma normalization warning   Gordon Smyth
• [BioC] LIMMA: duplicate correlation   Gordon Smyth
• [BioC] write.fit error   Gordon Smyth
• [BioC] two pair dye-swap (replicates) conducted in different labs   Gordon Smyth
• [BioC] Limma and Block Effects   Gordon Smyth
• [BioC] FW: Question (vennDiagram vs. topTable) for AffylmGUI 1.3.0   Gordon Smyth
• [BioC] Triplicate printing and limma   Gordon K Smyth
• [BioC] Need Advice on Analyzing Split Arrays   Gordon K Smyth
• [BioC] two pair dye-swap (replicates) conducted in different labs   Gordon K Smyth
• [BioC] Bioconductor Digest, Vol 31, Issue 7   Shruti Subramaniam
• [BioC] Bioconductor Digest, Vol 31, Issue 7   Shruti Subramaniam
• [BioC] Design and normalization of focused arrays   Klemens Vierlinger
• [BioC] Installation bundles for limmaGUI and affylmGUI Windows users   James Wettenhall
• [BioC] GOHyperG for KEGG   Gunnar Wrobel
• [BioC] gene expression baseline adjustment for pre/post treatment   Jun Xu
• [BioC] Please Help on how to install Mapping10K_XBa142 in R.   Zhang, Jacob (Zhongfa)
• [BioC] Help on mapping10xba142   Zhang, Jacob (Zhongfa)
• [BioC] passing character string as an environment arguement   John Zhang
• [BioC] GOstats error messages   John Zhang
• [BioC] AnnBuilder/ABPkgBuilder   John Zhang
• [BioC] installing bioconductor   jon butchar
• [BioC] installing bioconductor   jon butchar
• [BioC] increase R memory   crispi at igb.cnr.it
• [BioC] RP package   fhong at salk.edu
• [BioC] help with bayesian network   goldoni
• [BioC] how to run SAM analysis   weinong han
• [BioC] What wrong with my data using LIMMA   weinong han
• [BioC] What wrong with my data using LIMMA   weinong han
• [BioC] What wrong with my data using LIMMA   weinong han
• [BioC] What wrong with my data using LIMMA   weinong han
• [BioC] how to find out the differentially expressed genes?how to downweight the arrays?   weinong han
• [BioC] Simpleaffy problem   weinong han
• [BioC] Simpleaffy problem   weinong han
• [BioC] 4-color microarrays   hdvi
• [BioC] repeated measures with limma+lme   jjmichael at comcast.net
• [BioC] how to run SAM analysis   M a r c e l
• [BioC] kooperberg syntax fix   scholz at Ag.arizona.edu
• [BioC] another kooperberg question   scholz at Ag.arizona.edu
• [BioC] another kooperberg question   scholz at Ag.arizona.edu
• [BioC] write.fit error   scholz at Ag.arizona.edu
• [BioC] split arrays   scholz at Ag.arizona.edu
• [BioC] split arrays   scholz at Ag.arizona.edu
• [BioC] split arrays   scholz at Ag.arizona.edu
• [BioC] i would like to have your opinion on this design....   gregory voisin
• [BioC] Need Advice on Analyzing Split Arrays   yjzhang at uiuc.edu
• [BioC] limma normalization warning   yjzhang at uiuc.edu

Last message date: Fri Sep 30 23:00:12 CEST 2005
Archived on: Sat Oct 1 08:11:51 CEST 2005

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