[BioC] golubEsets package

[Jianping Jin]

You are correct Jim! That was my problem.
Thanks a lot!
Jianping

--On Tuesday, September 13, 2005 10:27 AM -0400 "James W. MacDonald" 
<jmacdon at med.umich.edu> wrote:

> Jianping Jin wrote:
>> Dear Bioconductor:
>>
>> I got a problem with "golubEsets". The warning message I got was "data
>> set  'golubMerge' not found in: data(golubMerge)". I checked my R
>> version and  package information on my Windows XP as below:
>
> I think the problem is you are trying to load something that is already
> loaded.
>
>  > library(golubEsets)
> Loading required package: Biobase
> Loading required package: tools
> Welcome to Bioconductor
>           Vignettes contain introductory material.  To view,
>           simply type: openVignette()
>           For details on reading vignettes, see
>           the openVignette help page.
>  > golubMerge
> Expression Set (exprSet) with
>          7129 genes
>          72 samples
>                   phenoData object with 11 variables and 72 cases
>           varLabels
>                  Samples: Sample index
>                  ALL.AML: Factor, indicating ALL or AML
>                  BM.PB: Factor, sample from marrow or peripheral blood
>                  T.B.cell: Factor, T cell or B cell leuk.
>                  FAB: Factor, FAB classification
>                  Date: Date sample obtained
>                  Gender: Factor, gender of patient
>                  pctBlasts: pct of cells that are blasts
>                  Treatment: response to treatment
>                  PS: Prediction strength
>                  Source: Source of sample
>  > data(golubMerge)
> Warning message:
> data set 'golubMerge' not found in: data(golubMerge)
>
> HTH,
>
> Jim
>
>
>>
>>
>>> sessionInfo()
>>
>> R version 2.1.0, 2005-04-18, i386-pc-mingw32
>>
>> attached base packages:
>> [1] "tools"     "methods"   "stats"     "graphics"  "grDevices" "utils"
>> "datasets"
>> [8] "base"
>>
>> other attached packages:
>> golubEsets    Biobase
>>      "1.0"   "1.5.12"
>>
>> For certainty, I removed the golubEsets folder under ../R/rw2010/library
>> and re-downloaded the package from the "Experiment data packages for
>> BioC  1.6 (stable) of the bioconductor web site. Install the .zip file
>> through  within R. The problem remained the same.
>>
>> I will appreciate it very much if anyone could help to fix the problem!
>>
>> Jianping
>>
>> xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
>> x Jianping Jin Ph.D.            x
>> x Bioinformatics scientist      x
>> x Center for bioinformatics     x
>> x 3133 Bioinformatics Building  x
>> x CB# 7104                      x
>> x University of North Carolina  x
>> x Chapel Hill, NC 27599         x
>> x Tel: (919)843-6105            x
>> x Fax: (919)843-3103            x
>> x E-mail: jjin at email.unc.edu    x
>> xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
>>
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>
>
> --
> James W. MacDonald
> Affymetrix and cDNA Microarray Core
> University of Michigan Cancer Center
> 1500 E. Medical Center Drive
> 7410 CCGC
> Ann Arbor MI 48109
> 734-647-5623



xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
x Jianping Jin Ph.D.            x
x Bioinformatics scientist      x
x Center for bioinformatics     x
x 3133 Bioinformatics Building  x
x CB# 7104                      x
x University of North Carolina  x
x Chapel Hill, NC 27599         x
x Tel: (919)843-6105            x
x Fax: (919)843-3103            x
x E-mail: jjin at email.unc.edu    x
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx