[BioC] problem with package version of rat2302 1.8.5

Ting-Yuan Liu (FHCRC) tliu at fhcrc.org
Wed Sep 28 10:17:29 CEST 2005


Hi Mark,

The function "getPkgVers" will read the version information from a file 
called "liblisting.Rda" in your library paths.  The function 
"sessionInfo" will find out which packages are loaded and then read the 
version information from their DESCRIPTION files directly.  

I think the information in your liblisting.Rda file is not up-to-dated 
(for some reason) so that the results from these two functions are 
different.  

HTH,
Ting-Yuan

On Tue, 27 Sep 2005, Kimpel, Mark William wrote:

> I have installed the newest version of annotation package rat2302, ver
> 1.8.5 .
> I have encountered what appears to be a discrepancy between the external
> and internal package version information. The code that reproduces this
> is below.
> 
> Am I looking at this wrong or is this an issue that can be addressed?
> 
> Mark
> 
> Mark W. Kimpel, M.D.
> 
> 
> > sessionInfo()
> R version 2.2.0, 2005-08-29, i386-pc-mingw32 
> 
> attached base packages:
> [1] "tools"     "methods"   "stats"     "graphics"  "grDevices" "utils"
> 
> [7] "datasets"  "base"     
> 
> other attached packages:
>       affy reposTools    Biobase    rat2302 
>    "1.7.2"    "1.6.2"    "1.7.0"    "1.8.5" 
> 
> > getPkgVers("rat2302")
> [[1]]
> [1] "1.8.4"
> 
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