[BioC] AnnBuilder/ABPkgBuilder

[John Zhang]

>getOption("AnnBuilderSourceUrls") gives me
>"ftp://ftp.ncbi.nih.gov/repository/UniGene" as an URL for UG, but this isn't
>working

A quick fix is to use getSrcUrl("all", organism = "Homo sapiens") (for human) 
instead of using getOption for source urls. We will change the options and have 
the pakcage updated.  

Thanks!

>
>since the file system has now subfolders "Homo_sapiens" etc. 
>
> 
>
>In your function getUGBuilt
>
>function (organism, url = "ftp://ftp.ncbi.nih.gov/repository/UniGene") 
>
>{
>
>    ..
>
>}
>
>the url is also hard-coded and this causes an error in reading the
>Hs.info-file under ftp://ftp.ncbi.nih.gov/repository/UniGene/Homo_sapiens.
>
> 
>
>Here my question now . is there a new version which fixes this problem or
>can you give me advice on how I can fix it?
>
>I wouldn't want to rewrite all these functions though .
>
> 
>
>Thank you very much.
>
>Daniela
>
> 
>
> 
>
>
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Jianhua Zhang
Department of Medical Oncology
Dana-Farber Cancer Institute
44 Binney Street
Boston, MA 02115-6084