July 2014 Archives by subject

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Starting: Tue Jul 1 00:19:50 CEST 2014
Ending: Thu Jul 31 23:29:56 CEST 2014
Messages: 484

• [BioC] 'RankMerging' changes sample names   Alex [guest]
• [BioC] .cel file processing is not working for an old array   Maria Kesa
• [BioC] .cel file processing is not working for an old array   Sean Davis
• [BioC] .cel file processing is not working for an old array   Maria Kesa
• [BioC] .cel file processing is not working for an old array   Martin Morgan
• [BioC] .cel file processing is not working for an old array   James W. MacDonald
• [BioC] 10 days to begin speaking a new language   Pimsleur Approach
• [BioC] [Bioc-devel] granges() method for GenomicRanges objects akin to ranges()...   Hervé Pagès
• [BioC] [Bioc-devel] granges() method for GenomicRanges objects akin to ranges()...   Julian Gehring
• [BioC] [Bioc-devel] granges() method for GenomicRanges objects akin to ranges()...   Michael Lawrence
• [BioC] [Bioc-devel] granges() method for GenomicRanges objects akin to ranges()...   Hervé Pagès
• [BioC] [Help for DESeq]: Error in lfproc - newsplit: out of vertex space   Imène SENINET
• [BioC] [Help for DESeq]: Error in lfproc - newsplit: out of vertex space   Wolfgang Huber
• [BioC] Affymetrix mouse 430_2 array - annotation problem   Rao,Xiayu
• [BioC] Affymetrix mouse 430_2 array - annotation problem   James W. MacDonald
• [BioC] Affymetrix mouse 430_2 array - annotation problem   Rao,Xiayu
• [BioC] Affymetrix mouse 430_2 array - gene expression and annotation   Rao,Xiayu
• [BioC] Affymetrix mouse 430_2 array - gene expression and annotation   James W. MacDonald
• [BioC] Affymetrix mouse 430_2 array - gene expression and annotation   Rao,Xiayu
• [BioC] Affymetrix mouse 430_2 array - gene expression and annotation   James W. MacDonald
• [BioC] Affymetrix mouse 430_2 array - gene expression and annotation   Rao,Xiayu
• [BioC] affymetrix rat 2.0 gene annotation issue   David
• [BioC] affymetrix rat 2.0 gene annotation issue   Marc Carlson
• [BioC] An. Gambie RNA-Seq differential expression using gage and pathview   Saul Lozano
• [BioC] An. Gambie RNA-Seq differential expression using gage and pathview   Luo Weijun
• [BioC] An. Gambie RNA-Seq differential expression using gage and pathview   Saul Lozano
• [BioC] annotating microarray data with mogene10stv1   Jakub Stanislaw Nowak
• [BioC] annotating microarray data with mogene10stv1   James W. MacDonald
• [BioC] annotating microarray data with mogene10stv1   James W. MacDonald
• [BioC] annotating microarray data with mogene10stv1   Jakub Stanislaw Nowak
• [BioC] annotating microarray data with mogene10stv1   Rao,Xiayu
• [BioC] annotating microarray data with mogene10stv1   Jakub Stanislaw Nowak
• [BioC] annotation for TAqman assay IDs   Bernard North
• [BioC] annotation for TAqman assay IDs   James W. MacDonald
• [BioC] apologies for the spam   Dan Tenenbaum
• [BioC] autoplot() in ggbio package for txdb object   sun
• [BioC] Basemean calculations with DESeq2   Nofar Chen [guest]
• [BioC] Basemean calculations with DESeq2   Michael Love
• [BioC] Basemean calculations with DESeq2   Michael Love
• [BioC] Batch effect confounded with additional covariate   Jie Yang [guest]
• [BioC] Bioc 2014 July 31 - August 1, Boston   Martin Morgan
• [BioC] Bioconductor newsletter - July 2014   Valerie Obenchain
• [BioC] bioc package update   Claudio Isella
• [BioC] bioc package update   Dan Tenenbaum
• [BioC] Bioinformatics Minisymposium at the University of Dundee   Reema Singh
• [BioC] Biomart annotation   jarod_v6 at libero.it
• [BioC] Biomart annotation   John Blischak
• [BioC] Biomart annotation   Steffen Durinck
• [BioC] Biostrings readDNAMultipleAlignment broken for fasta input   Janet Young
• [BioC] Biostrings readDNAMultipleAlignment broken for fasta input   Hervé Pagès
• [BioC] blast nt seq vs protein seq   carol white
• [BioC] blast nt seq vs protein seq   Dario Strbenac
• [BioC] BSgenome   Asma rabe
• [BioC] BSgenome   James W. MacDonald
• [BioC] BSgenome   Brian Herb
• [BioC] bug in estimateDisp() or mistake in documentation?   Zadeh, Jenny Drnevich
• [BioC] bug in estimateDisp() or mistake in documentation?   Gordon K Smyth
• [BioC] bug in estimateDisp() or mistake in documentation?   Zadeh, Jenny Drnevich
• [BioC] Bugs in HTqPCR implementation of data normalization   Peter Langfelder
• [BioC] Calculate the x when f(x) reaches its minimum   Zhan Tianyu
• [BioC] Calculate the x when f(x) reaches its minimum   Tim Triche, Jr.
• [BioC] Can Rank-production be applied to test the condition's effects on treatments?   Kaj Chokeshaiusaha [guest]
• [BioC] ChiPQC and paired-end data   Ugo Borello
• [BioC] ChiPQC and paired-end data   Carroll, Thomas
• [BioC] ChiPQC and paired-end data   Tom Carroll
• [BioC] ChiPQC and paired-end data   Ugo Borello
• [BioC] ChiPQC and paired-end data   Carroll, Thomas
• [BioC] co-expressed genes   deepak [guest]
• [BioC] co-expressed genes   Anthony Bosco
• [BioC] compare RNASeq with Exon array data at the gene-level and exon-level   shirley zhang
• [BioC] Complete variant toolbox: gmapR/VariantTools/VariantAnnotation - revived   Valerie Obenchain
• [BioC] Complete variant toolbox: gmapR/VariantTools/VariantAnnotation - revived   Robert Castelo
• [BioC] Complete variant toolbox: gmapR/VariantTools/VariantAnnotation - revived   Valerie Obenchain
• [BioC] Complete variant toolbox: gmapR/VariantTools/VariantAnnotation - revived   Robert Castelo
• [BioC] Complete variant toolbox: gmapR/VariantTools/VariantAnnotation - revived   Valerie Obenchain
• [BioC] Complete variant toolbox: gmapR/VariantTools/VariantAnnotation - revived   Robert Castelo
• [BioC] Complex contrasts for between and within subject comparisons   Tobias Neumann [guest]
• [BioC] Complex contrasts for between and within subject comparisons   Gordon K Smyth
• [BioC] Contrast matrix in limma   kaushal Chaudhary [guest]
• [BioC] Contrast matrix in limma   Gordon K Smyth
• [BioC] CRISPRseek-findgRNAs bug?   Zhu, Lihua (Julie)
• [BioC] CRISPRseek: findgRNAs bug?   Zhu, Lihua (Julie)
• [BioC] cummeRbund graphics not working   Sabet, Julia A
• [BioC] cummeRbund graphics not working   Loyal A. Goff
• [BioC] cummeRbund graphics not working   Sabet, Julia A
• [BioC] dealing with counfounded effects in experiment design   Ty Thomson
• [BioC] DeepSNV,Granges and BSgenome question   Asma rabe
• [BioC] DeepSNV,Granges and BSgenome question   Michael Lawrence
• [BioC] deepSNV error   Asma rabe
• [BioC] deepSNV error   Dario Strbenac
• [BioC] deepSNV error   Dario Strbenac
• [BioC] deepSNV Question   Asma rabe
• [BioC] deepSNV Question   Dario Strbenac
• [BioC] deepSNV Question   Asma rabe
• [BioC] deepSNV Question   Dario Strbenac
• [BioC] deepSNV Question   Dario Strbenac
• [BioC] DESeq2, plotting residuals vs.fitted values   Mike Miller
• [BioC] DESeq2, plotting residuals vs.fitted values   Michael Love
• [BioC] DESeq2, problems using list argument to extract results from DESeq   Jon BrÃ¥te [guest]
• [BioC] DESeq2, problems using list argument to extract results from DESeq   Simon Anders
• [BioC] DESeq2, problems using list argument to extract results from DESeq   Jon Bråte
• [BioC] DESeq2, problems using list argument to extract results from DESeq   Michael Love
• [BioC] DESeq2, problems using list argument to extract results from DESeq   Jon Bråte
• [BioC] DESeq2, problems using list argument to extract results from DESeq   Michael Love
• [BioC] DESeq2, problems using list argument to extract results from DESeq   Jon Bråte
• [BioC] DESeq2 - factor base level changes the DE genes.   Ximena [guest]
• [BioC] DESeq2 - interaction   Mike Miller
• [BioC] DESeq2 - interaction   Michael Love
• [BioC] DESeq2 1.2.10 vs 1.5.26   Ido Tamir
• [BioC] DESeq2 1.2.10 vs 1.5.26   Michael Love
• [BioC] DESeq2 1.2.10 vs 1.5.26   Michael Love
• [BioC] DESeq2: detect significantly increasing across an ordinal variable   Daniel Brewer (BIO)
• [BioC] DESeq2: detect significantly increasing across an ordinal variable   Michael Love
• [BioC] DESeq2: nested multi-factor design, singular matrix error   BJ Chen
• [BioC] DESeq2: nested multi-factor design, singular matrix error   Michael Love
• [BioC] DESeq2: nested multi-factor design, singular matrix error   BJ Chen
• [BioC] DESeq2: nested multi-factor design, singular matrix error   Michael Love
• [BioC] DESeq2: nested multi-factor design, singular matrix error   BJ Chen
• [BioC] DESeq2: nested multi-factor design, singular matrix error   Michael Love
• [BioC] DESeq2: nested multi-factor design, singular matrix error   BJ Chen
• [BioC] DESeq2: nested multi-factor design, singular matrix error   Michael Love
• [BioC] DESeq2: nested multi-factor design, singular matrix error   BJ Chen
• [BioC] DESeq2: nested multi-factor design, singular matrix error   Michael Love
• [BioC] Deseq2 and differentia expression   Simon Anders
• [BioC] DESEQ2 Contrasting Interaction Terms   rob yang
• [BioC] DESEQ2 Contrasting Interaction Terms   Michael Love
• [BioC] DESeq2 get coefficients for each variable in the design formula   Tran, Nhu Quynh T
• [BioC] DESeq2 get coefficients for each variable in the design formula   Michael Love
• [BioC] DESeq2 get coefficients for each variable in the design formula   Tran, Nhu Quynh T
• [BioC] DESeq2 get coefficients for each variable in the design formula   Michael Love
• [BioC] DESeq2 get coefficients for each variable in the design formula   Tran, Nhu Quynh T
• [BioC] DESeq2 missing columns   Kuenne, Carsten
• [BioC] DESeq2 missing columns   Michael Love
• [BioC] DESeq2 plotPCA and scale   Daniel Brewer (BIO)
• [BioC] DESeq2 plotPCA and scale   Michael Love
• [BioC] DESeq2 question regarding log2FC   Kuenne, Carsten
• [BioC] DESeq2 question regarding log2FC   Michael Love
• [BioC] Deseq for pairwise comparison among many pairs   avichai.amrad at ips.unibe.ch
• [BioC] Deseq for pairwise comparison among many pairs   Michael Love
• [BioC] DESeq Run Unequal Sample Size   Gihanna Galindez
• [BioC] DESeq Run Unequal Sample Size   Simon Anders
• [BioC] DESeqs two-factor two-level, interaction is interested   Shucong Li
• [BioC] DESeqs two-factor two-level, interaction is interested   Shucong Li
• [BioC] DESEq | Batch effect | VST data and linear model adjustment   Pesce, Francesco
• [BioC] DESEq | Batch effect | VST data and linear model adjustment   Simon Anders
• [BioC] DESEq | Batch effect | VST data and linear model adjustment   Pesce, Francesco
• [BioC] Designing a model with blocking and other interactions   Eleanor Su
• [BioC] Designing a model with blocking and other interactions   Gordon K Smyth
• [BioC] DEXSeq- fitDispersionFunction error   Anitha Sundararajan
• [BioC] DEXSeq- fitDispersionFunction error   Simon Anders
• [BioC] DEXSeq- fitDispersionFunction error   Rao,Xiayu
• [BioC] DEXSeq- fitDispersionFunction error   Anitha Sundararajan
• [BioC] DEXSeq continous variable in model   Alex Gutteridge
• [BioC] DEXSeq continous variable in model   Alex Gutteridge
• [BioC] dmpFinder results   Giovanni Calice
• [BioC] DNA Copy CNA function , what do you pass to maploc argument?   Nikolas Balanis
• [BioC] DNAcopy question   Niko [guest]
• [BioC] DNACopy Question what is passed to the maploc argument.   Nikolas Balanis
• [BioC] DNACopy Question what is passed to the maploc argument.   Valerie Obenchain
• [BioC] DNACopy Question what is passed to the maploc argument.   SeshanV at mskcc.org
• [BioC] DNACopy Question what is passed to the maploc argument.   Nikolas Balanis
• [BioC] DNACopy Question what is passed to the maploc argument.   SeshanV at mskcc.org
• [BioC] Dose response linear correlation using Limma   Christian De Santis
• [BioC] Dose response linear correlation using Limma   James W. MacDonald
• [BioC] Do This and Burn Fat Fast   Garcinia Cambogia Plus
• [BioC] Error in getting exons sequence   Asma rabe
• [BioC] Error in getting exons sequence   Valerie Obenchain
• [BioC] error in SRAdb   Faryabi, Robert (NIH/NCI) [F]
• [BioC] error in SRAdb   Dan Tenenbaum
• [BioC] error in SRAdb   Jack Zhu
• [BioC] error when estimating Dispersions for count table data in DESeq   梁芳
• [BioC] error when estimating Dispersions for count table data in DESeq   Simon Anders
• [BioC] Error while loading library GeneExpressionSignature   Alex [guest]
• [BioC] Error while loading library GeneExpressionSignature   yang Cao
• [BioC] Error while running DESeq   nisha [guest]
• [BioC] Error while running DESeq   Simon Anders
• [BioC] Error While running DESeq   Nisha Rana
• [BioC] Error While running DESeq   Simon Anders
• [BioC] error with makecdfenv package   James W. MacDonald
• [BioC] error with makecdfenv package   cstrato
• [BioC] error with makecdfenv package   James W. MacDonald
• [BioC] error with makecdfenv package   cstrato
• [BioC] error with makecdfenv package   TRAN Trang
• [BioC] estimation of size factors in DESeq2 analysis   Assa Yeroslaviz
• [BioC] estimation of size factors in DESeq2 analysis   Michael Love
• [BioC] Expected number of DE genes?   Jessica Perry Hekman
• [BioC] Expected number of DE genes?   Ryan
• [BioC] Expected number of DE genes?   Steve Lianoglou
• [BioC] Expected number of DE genes?   Thomas H. Hampton
• [BioC] Expected number of DE genes?   Jessica Perry Hekman
• [BioC] Expected number of DE genes?   Jessica Perry Hekman
• [BioC] Expected number of DE genes?   Jessica Perry Hekman
• [BioC] Expected number of DE genes?   Simon Anders
• [BioC] Expected number of DE genes?   Jessica Perry Hekman
• [BioC] failing to filter ExpressionSet object using nsFilter   David [guest]
• [BioC] failing to filter ExpressionSet object using nsFilter   Martin Morgan
• [BioC] failing to filter ExpressionSet object using nsFilter   David Bomze
• [BioC] failing to filter ExpressionSet object using nsFilter   Wolfgang Huber
• [BioC] failing to filter ExpressionSet object using nsFilter   James W. MacDonald
• [BioC] failing to filter ExpressionSet object using nsFilter   David Bomze
• [BioC] Find a Flexible Schedule for a Medical Billing and Coding Education Degree Program   Medical Billing and Coding
• [BioC] flowClean   Kipper Fletez-Brant
• [BioC] flowClean   Justin Meskas
• [BioC] flowClean   Kipper Fletez-Brant
• [BioC] FlowCore: Extracting parameters from estimateLogicle   Allenby, Mark
• [BioC] FlowCore: transform() NAs introduced by coercion   Allenby, Mark
• [BioC] FlowCore: transform() NAs introduced by coercion   Allenby, Mark
• [BioC] FlowCore: transform() NAs introduced by coercion   Greg Finak
• [BioC] FlowCore: transform() NAs introduced by coercion   Mike
• [BioC] FlowCore: transform() NAs introduced by coercion   Allenby, Mark
• [BioC] FlowCore: transform() NAs introduced by coercion   Mike
• [BioC] FlowCore Question   Mike
• [BioC] FlowPeaks - Get MFI values from clusters   Hefin Rhys Jones
• [BioC] Follow up on progress for brainarray cdfs on exon arrays.   Sin Yee Ku
• [BioC] frma and alternative CDFs   Tine Casneuf [guest]
• [BioC] frma and alternative CDFs   Matthew McCall
• [BioC] frma and alternative CDFs   Tine Casneuf
• [BioC] frma and alternative CDFs   Matthew McCall
• [BioC] frma and alternative CDFs   Tine Casneuf
• [BioC] frma and alternative CDFs   Matthew McCall
• [BioC] frma and alternative CDFs   Tine Casneuf
• [BioC] frma and alternative CDFs   Matthew McCall
• [BioC] frma and alternative CDFs   Tine Casneuf
• [BioC] frma and alternative CDFs   Matthew McCall
• [BioC] FW: Help with DESeq   Thuy Do
• [BioC] FW: Help with DESeq   Simon Anders
• [BioC] Fwd: deepSNV error   Asma rabe
• [BioC] genefilter   carol white
• [BioC] genefilter   Martin Morgan
• [BioC] genefilter   carol white
• [BioC] genefilter   Martin Morgan
• [BioC] Genes in GRanges object   Asma rabe
• [BioC] GenomeinfoDB   Irsan [guest]
• [BioC] GenomeinfoDB   Arora, Sonali
• [BioC] GenomeinfoDB   Hervé Pagès
• [BioC] GenomicAlignments - Speeding up readGAlignmentPairs()   Valerie Obenchain
• [BioC] GenomicAlignments - Speeding up readGAlignmentPairs()   Fong Chun Chan
• [BioC] GenomicAlignments - Speeding up readGAlignmentPairs()   Valerie Obenchain
• [BioC] GenomicAlignments - Speeding up readGAlignmentPairs()   Valerie Obenchain
• [BioC] GenomicAlignments - Speeding up readGAlignmentPairs()   Fong Chun Chan
• [BioC] GenomicAlignments - Speeding up readGAlignmentPairs()   Valerie Obenchain
• [BioC] GenomicAlignments - Speeding up readGAlignmentPairs()   Valerie Obenchain
• [BioC] GenomicAlignments - Speeding up readGAlignmentPairs()   Fong Chun Chan
• [BioC] GenomicAlignments - Speeding up readGAlignmentPairs()   Hervé Pagès
• [BioC] GenomicAlignments - Speeding up readGAlignmentPairs()   Fong Chun Chan
• [BioC] GenomicAlignments - Speeding up readGAlignmentPairs()   Hervé Pagès
• [BioC] GEOquery not parsing GSE expression sets   Maryvonne
• [BioC] GEOquery not parsing GSE expression sets   Sean Davis
• [BioC] GEOquery not parsing GSE expression sets   Sean Davis
• [BioC] ggbio plot coverage adjusted for library size   James W. MacDonald
• [BioC] ggbiplot   karthik [guest]
• [BioC] GOseq: count bias correction variations?   Christopher Conley
• [BioC] Goseq datasets   Eduardo Andres Leon
• [BioC] Goseq datasets   Andres.Eduardo
• [BioC] Goseq datasets   Eduardo Andres Leon
• [BioC] Goseq datasets   Eduardo Andres Leon
• [BioC] GWASTools: Sandwich SE   Adrienne Stilp
• [BioC] GWASTools instalation problem   Lopez Bobeda,Jose R
• [BioC] GWASTools instalation problem   Dan Tenenbaum
• [BioC] heatmap.2 x-axis label order problem   Rao,Xiayu
• [BioC] heatmap.2 x-axis label order problem   James W. MacDonald
• [BioC] Help installing 'rhdf5' in an "offline" environment   Ole Rogeberg
• [BioC] How to hide or suppress note about ward method in clValid package?   Kaj Chokeshaiusaha [guest]
• [BioC] How to hide or suppress note about ward method in clValid package?   Julian Gehring
• [BioC] how to read FCS3.1 files?   Mike
• [BioC] how to remove probeset   BEN HAMDA Cherif
• [BioC] How to write a flowFrame from a matrix   Allenby, Mark
• [BioC] How to write a flowFrame from a matrix   Kipper Fletez-Brant
• [BioC] How to write a flowFrame from a matrix   Mike
• [BioC] initializing DirichletMultinomial::dmn   Charles Berry
• [BioC] initializing DirichletMultinomial::dmn   Martin Morgan
• [BioC] initializing DirichletMultinomial::dmn   Charles C. Berry
• [BioC] Interaction term logFC   Neetha [guest]
• [BioC] Interaction term logFC   Michael Love
• [BioC] Interaction term logFC   James W. MacDonald
• [BioC] IRanges   Arun [guest]
• [BioC] IRanges   Michael Lawrence
• [BioC] Is a subset of my arrays from degraded RNA?   Peter Davidsen
• [BioC] Is a subset of my arrays from degraded RNA?   James W. MacDonald
• [BioC] ISMB talks: Pathview for pathway-based data integration and visualization   Luo Weijun
• [BioC] Job offers at Novartis, Basel and Cambridge (MA)   Kauffmann, Audrey
• [BioC] limma, analysis on subset of data gives completely different results   Arvid Sondén
• [BioC] limma, analysis on subset of data gives completely different results   Axel Klenk
• [BioC] limma, analysis on subset of data gives completely different results   James W. MacDonald
• [BioC] limma, analysis on subset of data gives completely different results   Aaron Mackey
• [BioC] limma, analysis on subset of data gives completely different results   Gordon K Smyth
• [BioC] limma, analysis on subset of data gives completely different results   Marcin Cieślik
• [BioC] limma, analysis on subset of data gives completely different results   Gordon K Smyth
• [BioC] limma contrast.matrix and design with "common reference"   Benedikt Athmer [guest]
• [BioC] limma contrast.matrix and design with "common reference"   James W. MacDonald
• [BioC] limma roast syntax for overall anova   Juliet Hannah
• [BioC] limma roast syntax for overall anova   Gordon K Smyth
• [BioC] limma roast syntax for overall anova   Juliet Hannah
• [BioC] limma roast syntax for overall anova   Gordon K Smyth
• [BioC] LIMMA similarity of contrast matrix, F test and topTable   Koen Van den Berge
• [BioC] LIMMA similarity of contrast matrix, F test and topTable   James W. MacDonald
• [BioC] LIMMA similarity of contrast matrix, F test and topTable   Koen Van den Berge
• [BioC] Linkage disequilibrium with 1000 Genomes/HapMap   Enrico Ferrero
• [BioC] Linkage disequilibrium with 1000 Genomes/HapMap   Enrico Ferrero
• [BioC] Linkage disequilibrium with 1000 Genomes/HapMap   Valerie Obenchain
• [BioC] makeTranscriptDbFromGFF Error for UCSC GTF File   Dario Strbenac
• [BioC] makeTranscriptDbFromGFF Error for UCSC GTF File   Marc Carlson
• [BioC] makeTranscriptDbFromGFF Error for UCSC GTF File   Hervé Pagès
• [BioC] makeTranscriptDbFromGFF Error for UCSC GTF File   Michael Lawrence
• [BioC] makeTranscriptDbFromGFF Error for UCSC GTF File   Simon Anders
• [BioC] makeTranscriptDbFromGFF Error for UCSC GTF File   Marc Carlson
• [BioC] Microarray data normalization   Bernard Lee Kok Bang
• [BioC] Microarray data normalization   Wolfgang Huber
• [BioC] mismatch nb in Biostrings   carol white
• [BioC] mismatch nb in Biostrings   Harris A. Jaffee
• [BioC] multi-level design - a simplified question   Rao,Xiayu
• [BioC] multi-level design - a simplified question - corrected table   Rao,Xiayu
• [BioC] multi-level design and contrasts problem - limma   Rao,Xiayu
• [BioC] multi-level experiments - limma   Rao,Xiayu
• [BioC] NCBI gff3 annotation file and read.gff()   Ugo Borello
• [BioC] NCBI gff3 annotation file and read.gff()   Michael Lawrence
• [BioC] NCBI gff3 annotation file and read.gff()   Martin Morgan
• [BioC] NCBI gff3 annotation file and read.gff()   Ugo Borello
• [BioC] NCBI gff3 annotation file and read.gff()   Chris Stubben
• [BioC] NCBI gff3 annotation file and read.gff()   Michael Lawrence
• [BioC] NCBI gff3 annotation file and read.gff()   Marc Carlson
• [BioC] NCBI gff3 annotation file and read.gff()   ugo.borello at inserm.fr
• [BioC] non-CpG methylated regions and strand information in MEDIPS output   Ioana [guest]
• [BioC] non-CpG methylated regions and strand information in MEDIPS output   Lukas Chavez
• [BioC] Normalization code for gene expression data   Suresh Dara
• [BioC] Normalization code for gene expression data   Gordon K Smyth
• [BioC] Notification: Sex Offenders Registered   Protect Your Children
• [BioC] Pathview hickups   Luo Weijun
• [BioC] pca plot   karthik [guest]
• [BioC] pca plot for gene expression   karthik [guest]
• [BioC] pca plot for gene expression   Michael Love
• [BioC] pca plot for gene expression   Michael Love
• [BioC] pca plot for gene expression   deepak karthik
• [BioC] pca plot for gene expression   Michael Love
• [BioC] Please comment the way I'm thinking about the way to find differentially expressed genes   Kaj Chokeshaiusaha [guest]
• [BioC] Please comment the way I'm thinking about the way to find differentially expressed genes   James W. MacDonald
• [BioC] Please comment the way I'm thinking about the way to find differentially expressed genes   Sean Davis
• [BioC] Please comment the way I'm thinking about the way to find differentially expressed genes   Kaj Chokeshaiusaha
• [BioC] Please comment the way I'm thinking about the way to find differentially expressed genes   Sean Davis
• [BioC] Please comment the way I'm thinking about the way to find differentially expressed genes   Dario Strbenac
• [BioC] Please comment the way I'm thinking about the way to find differentially expressed genes   Kaj Chokeshaiusaha
• [BioC] Postdoctoral Position in Statistical Systems Biology   Matthew McCall
• [BioC] power calculation of RNA-Seq   Michael Love
• [BioC] power calculation of RNA-Seq   Yanzhu Lin
• [BioC] power calculation of RNA-Seq   Zhijin Wu
• [BioC] Problem elaborating contrasts for DESeq2 analysis   Michael Love
• [BioC] Problem elaborating contrasts for DESeq2 analysis   Marine Rohmer
• [BioC] Problem elaborating contrasts for DESeq2 analysis   Michael Love
• [BioC] Problem in generating heatmap after R and Bioconductor Update   Remo [guest]
• [BioC] Problem in generating heatmap after R and Bioconductor Update   DaN
• [BioC] Problem in generating heatmap after R and Bioconductor Update   Remo Chiozzotto
• [BioC] processing Illumina HT12v4.0 expression data from GEO   Abhishek Pratap
• [BioC] processing Illumina HT12v4.0 expression data from GEO   Sean Davis
• [BioC] processing Illumina HT12v4.0 expression data from GEO   Abhishek Pratap
• [BioC] processing Illumina HT12v4.0 expression data from GEO   Sean Davis
• [BioC] processing Illumina HT12v4.0 expression data from GEO   Abhishek Pratap
• [BioC] processing Illumina HT12v4.0 expression data from GEO   Sean Davis
• [BioC] processing Illumina HT12v4.0 expression data from GEO   Abhishek Pratap
• [BioC] Putative bug in Biostrings   Hervé Pagès
• [BioC] Putative bug in Biostrings   Watal M. Iwasaki
• [BioC] PWMEnrich::sequenceReport() and 'res' global variable   Enrico Ferrero
• [BioC] Query regarding DESeq   Gourja Bansal
• [BioC] Query regarding DESeq   Wolfgang Huber
• [BioC] Question about decideTestsDGE()   Jon Bråte
• [BioC] Question about median of replicates   Sandra Fernandez Moya
• [BioC] Question about median of replicates   James W. MacDonald
• [BioC] Question about median of replicates   Steve Lianoglou
• [BioC] Question about median of replicates   Sandra Fernandez Moya
• [BioC] Question about Rle   Asma rabe
• [BioC] Question about Rle   Valerie Obenchain
• [BioC] Question about Rle   Valerie Obenchain
• [BioC] Quickly approaching: BioC 2014, Boston, July 31 - Aug 1   Martin Morgan
• [BioC] R: Re: Deseq2 and differentia expression   Simon Anders
• [BioC] R: Re: R: Re: R: Re: Deseq2 and differentia expression   Simon Anders
• [BioC] Ranked genes generated by learning datasets and Differentially expressed genes generated by original data   Kaj Chokeshaiusaha [guest]
• [BioC] Ranked genes generated by learning datasets and Differentially expressed genes generated by original data   Sean Davis
• [BioC] Ranked genes generated by learning datasets and Differentially expressed genes generated by original data   Kaj Chokeshaiusaha
• [BioC] read.celfiles error   VG
• [BioC] read.celfiles error   James W. MacDonald
• [BioC] read.maimages   Jeannette [guest]
• [BioC] read.maimages   Axel Klenk
• [BioC] Rebuild GO.sqlite from GO.db using complete GO database   Eric Fournier
• [BioC] Rebuild GO.sqlite from GO.db using complete GO database   Marc Carlson
• [BioC] Rebuild GO.sqlite from GO.db using complete GO database   Eric Fournier
• [BioC] remove duplicated rows generated by read.ilmn()   Rao,Xiayu
• [BioC] remove duplicated rows generated by read.ilmn()   Rao,Xiayu
• [BioC] Reverse signs of aging   Oceans Bounty
• [BioC] rhdf5 read/write concurrency surprise   Bernd Fischer
• [BioC] R hthgu133afrmavecs_1.1.0 error: row.effects should sum to zero   Matthew McCall
• [BioC] rlog() not in DESeq2?   Rishi [guest]
• [BioC] rlog() not in DESeq2?   Michael Love
• [BioC] rlog() not in DESeq2?   Rishi Sinha
• [BioC] rlog() not in DESeq2?   Michael Love
• [BioC] RMA Normalization Nimblegen with adf.txt file   Piet Jones
• [BioC] RMA Normalization Nimblegen with adf.txt file   Federico Lasa
• [BioC] RNA-Seq, generate batch-free count matrix   Brian Haas
• [BioC] RNA-Seq, generate batch-free count matrix   Dario Strbenac
• [BioC] RNA-Seq, generate batch-free count matrix   Gordon K Smyth
• [BioC] RNA-Seq, generate batch-free count matrix   Gordon K Smyth
• [BioC] RNA-Seq, generate batch-free count matrix   Brian Haas
• [BioC] RNA-Seq, generate batch-free count matrix   Gordon K Smyth
• [BioC] RNA-Seq, generate batch-free count matrix   Steve Lianoglou
• [BioC] RNA-Seq, generate batch-free count matrix   davide risso
• [BioC] RNA-Seq, generate batch-free count matrix   Jeff Leek
• [BioC] RNA-Seq, generate batch-free count matrix   Brian Haas
• [BioC] RNAseq expression threshold using DESeq2 normalised counts   Aditi [guest]
• [BioC] RNAseq expression threshold using DESeq2 normalised counts   QAMRA Aditi (GIS)
• [BioC] RNAseq expression threshold using DESeq2 normalised counts   Michael Love
• [BioC] Running DESeq with 1000 samples   Maoqi Xu [guest]
• [BioC] Running DESeq with 1000 samples   Steve Lianoglou
• [BioC] Running DESeq with 1000 samples   Simon Anders
• [BioC] Running DESeq with 1000 samples   Gordon K Smyth
• [BioC] selection of probes, probesets mapping to the same gene   carol white
• [BioC] selection of probes, probesets mapping to the same gene   Wolfgang Huber
• [BioC] ShortReadQ and conversion of quality scores to characters   Ivan Gregoretti
• [BioC] ShortReadQ and conversion of quality scores to characters   Martin Morgan
• [BioC] ShortReadQ and conversion of quality scores to characters   Ivan Gregoretti
• [BioC] small mistake in edgeRUsersGuide()   Zadeh, Jenny Drnevich
• [BioC] small mistake in edgeRUsersGuide()   Gordon K Smyth
• [BioC] SomaticSignatures   Huma Asif
• [BioC] SomaticSignatures   Julian Gehring
• [BioC] SomaticSignatures: could not find function "motifMatrix"   Max Salm [guest]
• [BioC] SomaticSignatures: could not find function "motifMatrix"   Julian Gehring
• [BioC] SomaticSignatures: could not find function "motifMatrix"   Julian Gehring
• [BioC] SomaticSignatures: could not find function "motifMatrix"   Julian Gehring
• [BioC] Subsetting clusters in flowPeaks   h.r.jones at qmul.ac.uk
• [BioC] Subsetting clusters in flowPeaks   h.r.jones at qmul.ac.uk
• [BioC] Suggestion for a small change to ChIPpeakAnno   Umassmed
• [BioC] Suggestion for a small change to ChIPpeakAnno   Ou, Jianhong
• [BioC] Suggestion for a small change to ChIPpeakAnno   Zhu, Lihua (Julie)
• [BioC] Suggestion for a small change to ChIPpeakAnno   Zhu, Lihua (Julie)
• [BioC] Suggestion for a small change to ChIPpeakAnno   Zhu, Lihua (Julie)
• [BioC] Suitable learning sets, gene selection methods and classification methods for low replicated microarray samples   Kaj Chokeshaiusaha [guest]
• [BioC] Suitable learning sets, gene selection methods and classification methods for low replicated microarray samples   Sean Davis
• [BioC] Suitable learning sets, gene selection methods and classification methods for low replicated microarray samples   Kaj Chokeshaiusaha
• [BioC] Suitable learning sets, gene selection methods and classification methods for low replicated microarray samples   Kaj Chokeshaiusaha
• [BioC] Technical Replicates in EdgeR   Neha Mehta
• [BioC] Technical Replicates in EdgeR   Gordon K Smyth
• [BioC] The difference between three methods in calcNormFacotors() in edgeR   Zhan Tianyu
• [BioC] The difference between three methods in calcNormFactors() in edgeR   Gordon K Smyth
• [BioC] Thread safety of BSgenome getSeq()   Johnston, Jeffrey
• [BioC] Thread safety of BSgenome getSeq()   Hervé Pagès
• [BioC] time course experiment   Gordon K Smyth
• [BioC] time course experiment   Rao,Xiayu
• [BioC] time course experiment   Gordon K Smyth
• [BioC] time course experiment   Rao,Xiayu
• [BioC] time course experiment   Gordon K Smyth
• [BioC] time course experiment design   Rao,Xiayu
• [BioC] time course experiment design   James W. MacDonald
• [BioC] top table or anova?   Konika Chawla
• [BioC] top table or anova?   James W. MacDonald
• [BioC] Unable to load XPS package in R studio   Nhu Quynh T. Tran
• [BioC] Unable to load XPS package in R studio   cstrato
• [BioC] Unable to load XPS package in R studio   Nhu Quynh T. Tran
• [BioC] Using DESeq2: experimental design and extracting results   Sridhar A Malkaram
• [BioC] Using DESeq2: experimental design and extracting results   Michael Love
• [BioC] Using GenomicAlignments to get Exon-centric Counts   Fong Chun Chan
• [BioC] Using GenomicAlignments to get Exon-centric Counts   Valerie Obenchain
• [BioC] Using GenomicAlignments to get Exon-centric Counts   Fong Chun Chan
• [BioC] Using GenomicAlignments to get Exon-centric Counts   Valerie Obenchain
• [BioC] vsn normalization in Ringo package   Maria Arnedo [guest]
• [BioC] vsn normalization in Ringo package   Joern Toedling
• [BioC] Would you like to connect on LinkedIn?   Yifang Tan
• [BioC] xps - error in normalize - "Error: Length of non-varying units is zero."   Thornton, Matthew
• [BioC] xps - error in normalize - "Error: Length of non-varying units is zero."   cstrato
• [BioC] xps - error in normalize - "Error: Length of non-varying units is zero."   cstrato
• [BioC] XPS crash while importing exon scheme   Nhu Quynh T. Tran
• [BioC] XPS crash while importing exon scheme   cstrato
• [BioC] XPS crash while importing exon scheme   Nhu Quynh T. Tran
• [BioC] XPS crash while importing exon scheme   cstrato
• [BioC] XPS crash while importing exon scheme   Nhu Quynh T. Tran
• [BioC] XPS crash while importing exon scheme   cstrato
• [BioC] XPS crash while importing exon scheme   Nhu Quynh T. Tran
• [BioC] XPS crash while importing exon scheme   cstrato
• [BioC] XPS differential expression   Quynh Tran
• [BioC] XPS differential expression   cstrato
• [BioC] XPS with Arabidopsis Gene 1.1 ST Array Strip   Benedikt [guest]
• [BioC] XPS with Arabidopsis Gene 1.1 ST Array Strip   cstrato
• [BioC] XPS with Arabidopsis Gene 1.1 ST Array Strip   cstrato
• [BioC] XPS with Arabidopsis Gene 1.1 ST Array Strip   cstrato
• [BioC] You're a 2014 Candidate for Who's Who! Confirm Now.   Whos Who
• [BioC] zlibbioc on Window -- was: Help installing 'rhdf5' in an "offline" environment   Wolfgang Huber
• [BioC] zlibbioc on Window -- was: Help installing 'rhdf5' in an "offline" environment   Bernd Fischer
• [BioC] zlibbioc on Window -- was: Help installing 'rhdf5' in an "offline" environment   Ole Rogeberg

Last message date: Thu Jul 31 23:29:56 CEST 2014
Archived on: Fri Aug 1 04:34:28 CEST 2014

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