[BioC] DEXSeq- fitDispersionFunction error

[Simon Anders]

Please post the complete code, i.e., all the command that led up to the 
error message

   Simon

On 29/07/14 22:31, Anitha Sundararajan wrote:
> Hello-
>
> Has anyone seen the following error before with DEXSeq?  I have run the
> tool a couple times before with no issues.
>
> So when I try to run the "fitDispersionFunction", I get the following:
>
> *no CR dispersion estimations found, please first call
> estimateDispersions function*
>
> I actually ran the estimateDispersions function prior to this without
> any problem.
>
> Thanks so much for your help.
> Anitha
>
> =====================================================
>   > sessionInfo()
> R version 3.0.2 (2013-09-25)
> Platform: x86_64-unknown-linux-gnu (64-bit)
>
> locale:
>    [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
>    [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
>    [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
>    [7] LC_PAPER=en_US.UTF-8       LC_NAME=C
>    [9] LC_ADDRESS=C               LC_TELEPHONE=C
> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
>
> attached base packages:
> [1] parallel  stats     graphics  grDevices utils     datasets methods
> [8] base
>
> other attached packages:
> [1] DEXSeq_1.8.0         Biobase_2.22.0       BiocGenerics_0.8.0
> [4] BiocInstaller_1.12.1
>
> loaded via a namespace (and not attached):
>    [1] biomaRt_2.18.0       Biostrings_2.30.1    bitops_1.0-6
>    [4] GenomicRanges_1.14.4 hwriter_1.3          IRanges_1.20.7
>    [7] RCurl_1.95-4.1       Rsamtools_1.14.3     statmod_1.4.20
> [10] stats4_3.0.2         stringr_0.6.2        tools_3.0.2
> [13] XML_3.98-1.1         XVector_0.2.0        zlibbioc_1.8.0
>
>
> 	[[alternative HTML version deleted]]
>
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