[BioC] deepSNV error
Dario Strbenac
dstr7320 at uni.sydney.edu.au
Thu Jul 31 04:00:16 CEST 2014
Hello,
The error message is clear. You need to provide a GRanges or data.frame variable for the regions of interest. If you read about exonsBy by opening the help page using ?exonsBy, you will see the returned variable is a GRangesList. Changing it to regions = gr[[1]] would test each exon of the first transcript in the GRangesList.
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Dario Strbenac
PhD Student
University of Sydney
Camperdown NSW 2050
Australia
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