[BioC] vsn normalization in Ringo package

[Maria Arnedo [guest]]

Hello everybody!

I am making the analysis of my arrays with the Ringo package and I have a couple of questions about the normalization. 

I have label my input with Cy5 and the output with Cy3, but I don't know if the Ringo package assumes that Cy5 is the input and Cy3 the output or vice-versa, when I make the vsn normalization of my data. Which one the Ringo package assume as a input? If it is the opposite way that I have labelled them, how can I make the analysis?

Thank you in advance

Best Regards,

Maria

 -- output of sessionInfo(): 

NA

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