[BioC] error in SRAdb

[Jack Zhu]

Hi Robert and Dan,

Out server was down during the weekend and it looks Dropbox has
blocked downloading files programmatically.  Anyway our server is
back. Please try again.

Sorry for the inconvenience.

Jack
----
Yuelin Jack Zhu

Biologist (Bioinformatics)
Genetics Branch/CCR/NCI/NIH
Tel: (301)496-4527
FAX: (301) 402-3241
E-mail: zhujack at mail.nih.gov


On Mon, Jul 21, 2014 at 12:55 PM, Dan Tenenbaum <dtenenba at fhcrc.org> wrote:
> CC'ing the maintainer of SRAdb.
> Dan
>
>
> ----- Original Message -----
>> From: "Robert Faryabi (NIH/NCI) [F]" <Babak.Faryabi at nih.gov>
>> To: bioconductor at r-project.org
>> Sent: Monday, July 21, 2014 9:45:34 AM
>> Subject: [BioC] error in SRAdb
>>
>> Hello list,
>>
>> I'm having problem with SRAdb package. Any suggestion is appreciated.
>> I'm getting the following error after trying to update my sqlite file
>> using getSRAdbFile() command.
>>
>> > getSRAdbFile()
>> trying URL 'http://dl.dropbox.com/u/51653511/SRAmetadb.sqlite.gz'
>> Error in download.file(url_sra, destfile = localfile, mode = "wb",
>> method = method) :
>>   cannot open URL
>>   'http://dl.dropbox.com/u/51653511/SRAmetadb.sqlite.gz'
>>
>> > sessionInfo()
>> R version 3.1.0 (2014-04-10)
>> Platform: x86_64-unknown-linux-gnu (64-bit)
>>
>> locale:
>> [1] C
>>
>> attached base packages:
>> [1] stats     graphics  grDevices utils     datasets  methods   base
>>
>> other attached packages:
>> [1] SRAdb_1.18.0   RCurl_1.95-4.1 bitops_1.0-6   graph_1.42.0
>>   RSQLite_0.11.4
>> [6] DBI_0.2-7
>>
>> loaded via a namespace (and not attached):
>> [1] Biobase_2.24.0      BiocGenerics_0.10.0 GEOquery_2.30.1
>> [4] XML_3.98-1.1        parallel_3.1.0      stats4_3.1.0
>> [7] tools_3.1.0
>>
>> Best,
>> Robert
>>
>> Robert Babak Faryabi, PhD
>>
>> Laboratory of Genome Integrity
>> NCI/NIH
>> Building 37, Room 1108
>> 37 Convent Drive
>> Bethesda, MD 20892
>> Tel: (301)594-6485
>> Fax: (301)402-0711
>> URL: http://ccr.cancer.gov/labs/lab.asp?labid=920
>>
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>>