[BioC] error in SRAdb
Faryabi, Robert (NIH/NCI) [F]
Babak.Faryabi at nih.gov
Mon Jul 21 18:45:34 CEST 2014
Hello list,
I'm having problem with SRAdb package. Any suggestion is appreciated.
I'm getting the following error after trying to update my sqlite file using getSRAdbFile() command.
> getSRAdbFile()
trying URL 'http://dl.dropbox.com/u/51653511/SRAmetadb.sqlite.gz'
Error in download.file(url_sra, destfile = localfile, mode = "wb", method = method) :
cannot open URL 'http://dl.dropbox.com/u/51653511/SRAmetadb.sqlite.gz'
> sessionInfo()
R version 3.1.0 (2014-04-10)
Platform: x86_64-unknown-linux-gnu (64-bit)
locale:
[1] C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] SRAdb_1.18.0 RCurl_1.95-4.1 bitops_1.0-6 graph_1.42.0 RSQLite_0.11.4
[6] DBI_0.2-7
loaded via a namespace (and not attached):
[1] Biobase_2.24.0 BiocGenerics_0.10.0 GEOquery_2.30.1
[4] XML_3.98-1.1 parallel_3.1.0 stats4_3.1.0
[7] tools_3.1.0
Best,
Robert
Robert Babak Faryabi, PhD
Laboratory of Genome Integrity
NCI/NIH
Building 37, Room 1108
37 Convent Drive
Bethesda, MD 20892
Tel: (301)594-6485
Fax: (301)402-0711
URL: http://ccr.cancer.gov/labs/lab.asp?labid=920
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