[BioC] Error While running DESeq
Nisha Rana
nishurana22 at yahoo.in
Sat Jul 5 12:10:28 CEST 2014
While running DEseq for DGE, I am facing following problem.
Error in preplot.locfit.raw(object, newdata, where, what, band) :
NA/NaN/Inf in foreign function call (arg 2)
Calls: estimateDispersions ... predict.locfit -> preplot.locfit ->
preplot.locfit.raw -> .C
In addition: Warning messages:
1: In lfproc(x, y, weights = weights, cens = cens, base = base, geth =
geth, :
compparcomp: perfect fit
2: In lfproc(x, y, weights = weights, cens = cens, base = base, geth =
geth, :
procv: parameters out of bounds
3: In lfproc(x, y, weights = weights, cens = cens, base = base, geth =
geth, :
max_nr not converged
Execution halted
My file does not contain any "NA or empty cells", I have tried every
possible thing but still not able to find the problem behind this error.
Kindly suggest me some solution for this.
I have attached the subset of input file along with this mail. Waiting for your positive
response.]
Regards,
Nisha
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