[BioC] XPS crash while importing exon scheme

[cstrato]

Dear Quynh,

Since I am also using Mac OS X Lion 10.7.5, here are my steps how to 
compile root:

./configure --help
./configure macosx64 --with-cc=gcc --with-cxx=g++ --with-ld=g++ 
--with-f77="/usr/bin/gfortran-4.2"
make
. bin/thisroot.sh
(Since you have bash there is no need to do "source bin/thisroot.sh")

This setting is for compiling root with gcc.
For clang configure should be:
./configure macosx64 --with-f77="/usr/bin/gfortran-4.2"

The warnings can be ignored.

BTW, I think that the binary 
root_v5.34.05.macosx106-x86_64-gcc-4.2.tar.gz should work on Lion, too.

Best regards,
Christian



On 7/24/14 11:48 PM, Nhu Quynh T. Tran wrote:
> Dear Christian,
>
> So, I downloaded the root_v5.34.05.source.tar.gz and did the whole installation again.  At the end it said ROOT BUILD SUCCESSFUL, but when I typed "root" after doing ". bin/thisroot.sh" and "source bin/thisroot.sh", NOTHING HAPPENED. I could not quit when typing ".q".  I had to do Ctr-Z.
>
> Do you know what is wrong?
>
> Below are the 5 warnings that were generated during the installation:
>
> In file included from cint/cint/lib/dll_stl/rootcint_set.h:18:
> include/G__ci.h:971:7: warning: private field 'type' is not used [-Wunused-private-field]
>    int type;
>        ^
> include/G__ci.h:972:7: warning: private field 'tagnum' is not used [-Wunused-private-field]
>    int tagnum;
>        ^
> include/G__ci.h:973:7: warning: private field 'typenum' is not used [-Wunused-private-field]
>    int typenum;
>        ^
> include/G__ci.h:975:19: warning: private field 'isconst' is not used [-Wunused-private-field]
>    G__SIGNEDCHAR_T isconst;
>                    ^
> include/G__ci.h:977:29: warning: private field 'dummyForCint7' is not used [-Wunused-private-field]
>    struct G__DUMMY_FOR_CINT7 dummyForCint7;
>                              ^
> 5 warnings generated.
>
> Quynh
>
> On Jul 24, 2014, at 3:19 PM, cstrato wrote:
>
>> Dear Quynh,
>>
>> You could simply delete the root folder, however, what I usually do is to simply rename the folder to e.g. 'root_v53419. In this way I can keep different versions of root and rename the current version to 'root'.
>>
>> Best regards,
>> Christian
>>
>> On 7/24/14 10:10 PM, Nhu Quynh T. Tran wrote:
>>> Dear Christian,
>>>
>>> I think I should uninstall the current vernon of root before installing the v5.34.05, correct?.  How do I do that?  Just delete the root folder?
>>>
>>> Thanks,
>>> Quynh
>>>
>>> On Jul 24, 2014, at 2:36 PM, cstrato wrote:
>>>
>>>> Dear Quynh,
>>>>
>>>> You still need root_v5.34.05, but this time from:
>>>> ftp://root.cern.ch/root/root_v5.34.05.macosx106-x86_64-gcc-4.2.tar.gz
>>>>
>>>> Alternatively, if you are willing to compile xps then you can keep your current version of root. You can download the source file and do e.g.
>>>> R CMD INSTALL -l ~/Library/R/3.0/library xps_1.24.0.tar.gz
>>>>
>>>> Best regards,
>>>> Christian
>>>>
>>>>
>>>> On 7/24/14 9:22 PM, Nhu Quynh T. Tran wrote:
>>>>> Dear Christian,
>>>>>
>>>>> My root file is root_v5.34.19.  I'm using Mac OS X Lion 10.7.5.  What
>>>>> should be the right root version to use?
>>>>>
>>>>> Thanks,
>>>>> Quynh
>>>>>
>>>>>
>>>>> On Jul 24, 2014, at 1:46 PM, cstrato wrote:
>>>>>
>>>>>> ftp://root.cern.ch/root/root_v5.34.05.macosx64-10.8-i386.tar.gz
>>>>>
>>>
>>>
>
>