[BioC] How to hide or suppress note about ward method in clValid package?
Kaj Chokeshaiusaha [guest]
guest at bioconductor.org
Mon Jul 21 16:13:38 CEST 2014
Dear R helpers,
I've used clValid package and use these command lines as following.
one2one.stability.hk <- clValid(obj=t(prep), nClust=c(2:4),
clMethods = c("hierarchical", "diana",
"fanny","som","model"),
validation = "stability",
maxitems = 13,
metric = "correlation", method = "ward",
neighbSize = 10,
annotation = NULL,
GOcategory = "all", goTermFreq=0.05,dropEvidence=NULL,verbose=FALSE)
During the process, the message
The "ward" method has been renamed to "ward.D"; note new"ward.D2"
keep showing unrelently. It is not the warnings and I can't manage to find a way to stop them. Would you please suggest me how to deal with the problem?
Best Regards,
Kaj
-- output of sessionInfo():
R version 3.1.0 (2014-04-10)
Platform: x86_64-pc-linux-gnu (64-bit)
locale:
[1] LC_CTYPE=en_GB.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_GB.UTF-8 LC_COLLATE=en_GB.UTF-8
[5] LC_MONETARY=en_GB.UTF-8 LC_MESSAGES=en_GB.UTF-8
[7] LC_PAPER=en_GB.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] clValid_0.6-6 cluster_1.15.2
loaded via a namespace (and not attached):
[1] class_7.3-10
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