December 2011 Archives by date

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Starting: Thu Dec 1 00:19:37 CET 2011
Ending: Sat Dec 31 04:33:52 CET 2011
Messages: 361

• [BioC] Probe level normalization   suri ghani
• [BioC] Bioconductor Employment: Statistical Research Associate   Martin Morgan
• [BioC] how to add a table to AnnotationDbi sqlite database?   Dana.Stanley at csiro.au
• [BioC] Probe level normalization   MacDonald, James
• [BioC] Limma Dual Color Agilent : Mixed model or not?   Gordon K Smyth
• [BioC] cummeRbund Error in Volcano Plot   Chintan Vora - Xcelris
• [BioC] Fwd: Re: Installing Bioconductor packages on R 2.14.0 *without* administrator rights / from a script   Joern Toedling
• [BioC] ddCt isn't working with exported ABI7500-RT-PACR file   Alnaji, Fadi
• [BioC] ddCt isn't working with exported ABI7500-RT-PACR file   James Perkins
• [BioC] ddCt isn't working with exported ABI7500-RT-PACR file   Alnaji, Fadi
• [BioC] custom SNPlocs / BSgenome package   km
• [BioC] how to add a table to AnnotationDbi sqlite database?   Marc Carlson
• [BioC] biocLite, ask=FALSE bug   Kasper Daniel Hansen
• [BioC] ddCt isn't working with exported ABI7500-RT-PACR file   Jitao David Zhang
• [BioC] biocLite, ask=FALSE bug   Dan Tenenbaum
• [BioC] biocLite, ask=FALSE bug   James W. MacDonald
• [BioC] biocLite, ask=FALSE bug   Dan Tenenbaum
• [BioC] biocLite, ask=FALSE bug   Dan Tenenbaum
• [BioC] biocLite, ask=FALSE bug   Kasper Daniel Hansen
• [BioC] edgeR - R script - results compared to DESeq   Gordon K Smyth
• [BioC] arrayQualityMetrics: expression or probe-level data?   Efthimios MOTAKIS
• [BioC] some basic questions   anand m t
• [BioC] edgeR on microRNA data   David Fredman
• [BioC] DESeq variance question   Steffen Priebe
• [BioC] Limma - RNA-Seq DE genes - Quantile normalized log transformed RPKM data   Avinash S
• [BioC] cummeRbund Error in Volcano Plot   Valerie Obenchain
• [BioC] cummeRbund Error in Volcano Plot   Loyal Goff
• [BioC] using GAIA   viritha k
• [BioC] MOving from Affy to Lumi: Annotations Problem   Thomas H. Hampton
• [BioC] custom SNPlocs / BSgenome package   Hervé Pagès
• [BioC] MOving from Affy to Lumi: Annotations Problem   Martin Morgan
• [BioC] arrayQualityMetrics produces non-interactive PCA plot (Figure 3)   Vladimir Zhurov
• [BioC] cummeRbund Error in Volcano Plot   Chintan Vora - Xcelris
• [BioC] Restoring TranscriptDb object crashes R-session   Halian Vilela
• [BioC] some basic questions   Kasper Daniel Hansen
• [BioC] Restoring TranscriptDb object crashes R-session   Martin Morgan
• [BioC] Restoring TranscriptDb object crashes R-session   Halian Vilela
• [BioC] DESeq variance question   Simon Anders
• [BioC] comparison between two toptable   Alberto Goldoni
• [BioC] some basic questions   Richard Friedman
• [BioC] Limma - RNA-Seq DE genes - Quantile normalized log transformed RPKM data   Gordon K Smyth
• [BioC] Limma Dual Color Agilent : Mixed model or not?   Gordon K Smyth
• [BioC] arrayQualityMetrics produces non-interactive PCA plot (Figure 3)   Wolfgang Huber
• [BioC] arrayQualityMetrics: expression or probe-level data?   Wolfgang Huber
• [BioC] error in DEXSeq fitDispersionFunction()   Wolfgang Huber
• [BioC] Error with package ExpressionView   Kavita Garg [guest]
• [BioC] intragenic sequence extraction   Yating Cheng
• [BioC] DESeq variance question   Gordon K Smyth
• [BioC] DESeq variance question   Gordon K Smyth
• [BioC] intragenic sequence extraction   Steve Lianoglou
• [BioC] arrayQualityMetrics produces non-interactive PCA plot (Figure 3)   Vladimir Zhurov
• [BioC] Limma Dual Color Agilent : Mixed model or not?   Guillaume Meurice
• [BioC] [Job] Bioinformatician-NGS (Vienna, Austria)   Ido Tamir
• [BioC] NucleR: processReads/solveUserSEW0 - Error   Stefanie Ververs
• [BioC] lumiR Does Not Create lumi Batch   Thomas H. Hampton
• [BioC] lumiR Does Not Create lumi Batch   Sean Davis
• [BioC] NucleR: processReads/solveUserSEW0 - Error   Oscar Flores
• [BioC] Error when using the nsFilter command in the genefilter package   Peter Davidsen
• [BioC] Error when using the nsFilter command in the genefilter package   James W. MacDonald
• [BioC] Error when using the nsFilter command in the genefilter package   Martin Morgan
• [BioC] lumiR Does Not Create lumi Batch   Sean Davis
• [BioC] GenomeGraphs plots: polygon tracks for sequencing coverage data   Samuel Wuest
• [BioC] error in DEXSeq fitDispersionFunction()   Georg Otto
• [BioC] DEXSeq availability   Wyatt McMahon [guest]
• [BioC] DEXSeq availability   Dan Tenenbaum
• [BioC] Rsubread package not available?   Noah Dowell
• [BioC] Rsubread package not available?   James W. MacDonald
• [BioC] Rsubread package not available? Warning resolved   NDowell
• [BioC] error in DEXSeq fitDispersionFunction()   Wolfgang Huber
• [BioC] Error when using the nsFilter command in the genefilter package   Wolfgang Huber
• [BioC] arrayQualityMetrics produces non-interactive PCA plot (Figure 3)   Wolfgang Huber
• [BioC] Trying to use the liftOver function from the rtracklayer package in R 2.14.0   Leonardo Collado Torres
• [BioC] Trying to use the liftOver function from the rtracklayer package in R 2.14.0   Michael Lawrence
• [BioC] question for SPIA package   Jing Huang
• [BioC] how to install gnGNF1a cdf and probe files to a recent version of R (2.13.1)?   Nicholas Wong
• [BioC] Beadarray import of iScan generated Illumina gene expression data   Aliaksei Holik
• [BioC] Job: Biostatistician/Bioinformatician, University of Cambridge, UK   Krys Kelly
• [BioC] Inconsistency in illuminaHumanv4.db ?   Mark Dunning
• [BioC] DEXSeq availability   Wyatt McMahon
• [BioC] Error with package ExpressionView   Valerie Obenchain
• [BioC] using GenomicFeature   Zhi Zhang
• [BioC] using GenomicFeature   Steve Lianoglou
• [BioC] arrayQualityMetrics subscript out of bounds error and Harshlight error   Matthew McCormack
• [BioC] arrayQualityMetrics subscript out of bounds error and Harshlight error   Wolfgang Huber
• [BioC] how to match a regular expression to XString, XStringViews or MaskedXString object   wang peter
• [BioC] arrayQualityMetrics subscript out of bounds error and Harshlight error   Matthew McCormack
• [BioC] Median/Quantile values table   tiziano pramparo [guest]
• [BioC] library size and fold changes   Bogdan Tanasa
• [BioC] Distance from TSS and CPG   Khadeeja Ismail
• [BioC] Beadarray import of iScan generated Illumina gene expression data   Mike Smith
• [BioC] countOverlaps, package:IRanges (Michael Lawrence)   Tatjana
• [BioC] how to match a regular expression to XString, XStringViews or MaskedXString object   Harris A. Jaffee
• [BioC] SPIA package   Tarca, Adi
• [BioC] MDS in edgeR   Susanne Franssen
• [BioC] simple limma question (read.ilmn)   Kripa R
• [BioC] Summarising Probe Sets for Agilent 4x44 Arrays   Samantha Jane England
• [BioC] library size and fold changes   Gordon K Smyth
• [BioC] Job: Seeking a Postdoctoral Researcher or Research Associate , RIKEN Yokohama Institute, Japan   Dr. Sujatha Mohan
• [BioC] cellHTS2 variance by plate calculation?   Stephen Baird [guest]
• [BioC] simple limma question (read.ilmn)   Wei Shi
• [BioC] simple limma question (read.ilmn)   Kripa R
• [BioC] Rsubread package not available? Warning resolved   Wei Shi
• [BioC] Rsubread package not available? Warning resolved   Robert Castelo
• [BioC] using beadarray to analyze data from iScan   John Alexander
• [BioC] countOverlaps, package:IRanges (Michael Lawrence)   Michael Lawrence
• [BioC] how to add a table to AnnotationDbi sqlite database?   Dana.Stanley at csiro.au
• [BioC] Background correction with neqc   Femke [guest]
• [BioC] how to install gnGNF1a cdf and probe files to a recent version of R (2.13.1)?   James W. MacDonald
• [BioC] Trying to use the liftOver function from the rtracklayer package in R 2.14.0   Michael Lawrence
• [BioC] cellHTS2 variance by plate calculation?   Joseph Barry
• [BioC] Rsubread package not available? Warning resolved   Noah Dowell
• [BioC] Help on cghMCR units of gapAllowed   Nathalie Conte
• [BioC] plotMDS.dge error   Bruce Moran(External)
• [BioC] Background correction with neqc   Tim Triche, Jr.
• [BioC] Rsubread package not available? Warning resolved   Tim Triche, Jr.
• [BioC] Rsubread package not available? Warning resolved   Tim Triche, Jr.
• [BioC] EdgeR GLM   Wood, Shona
• [BioC] how to analyze   Adrian Johnson
• [BioC] Trying to use the liftOver function from the rtracklayer package in R 2.14.0   Leonardo Collado Torres
• [BioC] Rsubread package not available? Warning resolved   Noah Dowell
• [BioC] preprocessing pipeline of aglient Custom GE 8x15k single color array   Justin
• [BioC] how to install gnGNF1a cdf and probe files to a recent version of R (2.13.1)?   Nicholas Wong
• [BioC] how to install gnGNF1a cdf and probe files to a recent version of R (2.13.1)?   Hooiveld, Guido
• [BioC] cellHTS2 variance by plate calculation?   Stephen Baird
• [BioC] Summarising Probe Sets for Agilent 4x44 Arrays   Francois Pepin
• [BioC] MDS in edgeR   Gordon K Smyth
• [BioC] Rsubread package not available? Warning resolved   Wei Shi
• [BioC] Background correction with neqc   Wei Shi
• [BioC] MDS in edgeR   Gordon K Smyth
• [BioC] Rsubread package not available? Warning resolved   Dan Tenenbaum
• [BioC] Rsubread package not available? Warning resolved   Wei Shi
• [BioC] unimplemented options select=last and select=arbitrary in findOverlaps for GRanges   Janet Young
• [BioC] FW: EdgeR GLM   Wood, Shona
• [BioC] using beadarray to analyze data from iScan   Mike Smith
• [BioC] IDAT files upload error, MethyLumiM object: IlluminaHumanMethylation450k   Magdalena Wozniak
• [BioC] Minor allele frequency comparison   Scott Harding
• [BioC] plotMDS.dge error   Davis, Wade
• [BioC] REACTOME biomaRt not working in R 2.14, biomaRt 2.10.0   kenny daily
• [BioC] Should I compute RMA expression measures separately for different treament groups?   Clémentine Dressaire
• [BioC] Should I compute RMA expression measures separately for different treament groups?   wang peter
• [BioC] IDAT files upload error, MethyLumiM object: IlluminaHumanMethylation450k   Tim Triche, Jr.
• [BioC] REACTOME biomaRt not working in R 2.14, biomaRt 2.10.0   Dan Tenenbaum
• [BioC] IDAT files upload error, MethyLumiM object: IlluminaHumanMethylation450k   Nicholas Wong
• [BioC] IDAT files upload error, MethyLumiM object: IlluminaHumanMethylation450k   Tim Triche, Jr.
• [BioC] Background correction with neqc   Gordon K Smyth
• [BioC] plotMDS.dge error   Gordon K Smyth
• [BioC] EdgeR GLM   Gordon K Smyth
• [BioC] REACTOME biomaRt not working in R 2.14, biomaRt 2.10.0   kenny daily
• [BioC] Should I compute RMA expression measures separately for different treament groups?   Wolfgang Huber
• [BioC] a question about how to use ChIPseqR   wang peter
• [BioC] Installing Bioconductor packages on R 2.14.0 *without* administrator rights / from a script   Firas Swidan
• [BioC] RNA-seq Workshop An introductory course to RNA-seq 1st-2nd March 2012 Torino, Italy   rcaloger
• [BioC] IDAT files upload error, MethyLumiM object: IlluminaHumanMethylation450k   Magdalena Wozniak
• [BioC] Difference between LIMMA and Genespring   Jin, Ming
• [BioC] seeking help on cghMCR pleeeease   Nathalie Conte
• [BioC] total number of reads? mapped reads? or total counts?   wang peter
• [BioC] help with DESeq   Akula, Nirmala (NIH/NIMH) [C]
• [BioC] Rocks cluster   Paz Tapia Ramirez
• [BioC] Rocks cluster   Vincent Carey
• [BioC] seqLogo package: sequence logo graph with background frequency?   Tim Smith
• [BioC] help with DESeq   Simon Anders
• [BioC] Rocks cluster   Vincent Carey
• [BioC] help with DESeq   Akula, Nirmala (NIH/NIMH) [C]
• [BioC] help with DESeq   Simon Anders
• [BioC] help with DESeq   Akula, Nirmala (NIH/NIMH) [C]
• [BioC] Obtaining DNA sequence with biomaRt getSequence   Michael Gormley
• [BioC] total number of reads? mapped reads? or total counts?   Mark Robinson
• [BioC] EdgeR GLM   Wood, Shona
• [BioC] EdgeR GLM   Wood, Shona
• [BioC] Combining 2 different Affychips for analysis e.g. HGU133A and HGU133plus2   Narendra Kaushik [guest]
• [BioC] MA plot for highthrouput qPCR assay   Ali Mohammadian
• [BioC] deqseq_count and BWA-based SAM files   Wyatt McMahon [guest]
• [BioC] PCA to remove batch effect.   Fabrice Tourre
• [BioC] PCA to remove batch effect.   Richard Friedman
• [BioC] Minimal region of overlap between two GRanges objects   Daniel Brewer
• [BioC] deqseq_count and BWA-based SAM files   Wood, Shona
• [BioC] estimateGLMCommonDisp and dispCoxReid in edgeR   Davis, Wade
• [BioC] deqseq_count and BWA-based SAM files   wang peter
• [BioC] plotMeanVar and coxreid method in edgeR   Davis, Wade
• [BioC] PCA to remove batch effect.   Fabrice Tourre
• [BioC] PCA to remove batch effect.   Richard Friedman
• [BioC] PCA to remove batch effect.   Fabrice Tourre
• [BioC] PCA to remove batch effect.   Richard Friedman
• [BioC] PCA to remove batch effect.   Kasper Daniel Hansen
• [BioC] PCA to remove batch effect.   Kasper Daniel Hansen
• [BioC] Minimal region of overlap between two GRanges objects   Martin Morgan
• [BioC] Minimal region of overlap between two GRanges objects   Daniel Brewer
• [BioC] Minimal region of overlap between two GRanges objects   Tim Triche, Jr.
• [BioC] Minimal region of overlap between two GRanges objects   Kasper Daniel Hansen
• [BioC] deqseq_count and BWA-based SAM files   Steve Lianoglou
• [BioC] deqseq_count and BWA-based SAM files   Wyatt McMahon
• [BioC] how to use bioconductor to download all virus sequence from ncbi   wang peter
• [BioC] deqseq_count and BWA-based SAM files   Simon Anders
• [BioC] estimateGLMCommonDisp and dispCoxReid in edgeR   Gordon K Smyth
• [BioC] estimateGLMCommonDisp and dispCoxReid in edgeR   Gordon K Smyth
• [BioC] plotMeanVar and coxreid method in edgeR   Gordon K Smyth
• [BioC] EdgeR GLM   Gordon K Smyth
• [BioC] how to use bioconductor to download all virus sequence from ncbi   Sean Davis
• [BioC] how to add a table to AnnotationDbi sqlite database?   Marc Carlson
• [BioC] PCA to remove batch effect.   Fabrice Tourre
• [BioC] error message in GeneSetTest in limma   Esther Robinson
• [BioC] sva remove batch effect.   Fabrice Tourre
• [BioC] Biostrings: PWM with background probabilities   Tim Smith
• [BioC] error message in GeneSetTest in limma   Sean Davis
• [BioC] residual variances in Deseq packages   Hubert Rehrauer
• [BioC] Combining 2 different Affychips for analysis e.g. HGU133A and HGU133plus2   Fong Chun Chan
• [BioC] [biomaRt] contradicting gene information   Paul Theodor Pyl
• [BioC] question Re Infinium 450K data analysis   Chen, Zhuo
• [BioC] Combining 2 different Affychips for analysis e.g. HGU133A and HGU133plus2   wang peter
• [BioC] Distance from TSS and CPG   Tim Triche, Jr.
• [BioC] question Re Infinium 450K data analysis   Tim Triche, Jr.
• [BioC] GRangesList replacement method bug   Richard Bourgon
• [BioC] getSequence with biomaRt   Michael Gormley
• [BioC] Has anyone successfully used sva packages?   Fabrice Tourre
• [BioC] EdgeR GLM   Wood, Shona
• [BioC] Extracting PROBE_ID from lumiBatch   Thomas H. Hampton
• [BioC] Has anyone successfully used sva packages?   jhua at tgen.org
• [BioC] Difference between LIMMA and Genespring   Edwin Groot
• [BioC] plotMeanVar and coxreid method in edgeR   Davis McCarthy
• [BioC] Removing batch effects with sva and combat using the sva package   Jeff Leek
• [BioC] Removing batch effects with sva and combat using the sva package   Andrew Teschendorff
• [BioC] [biomaRt] contradicting gene information   Steve Lianoglou
• [BioC] GRangesList replacement method bug   Hervé Pagès
• [BioC] Removing batch effects with sva and combat using the sva package   Jeff Leek
• [BioC] EdgeR GLM   Gordon K Smyth
• [BioC] EdgeR GLM   Gordon K Smyth
• [BioC] TopTable function in affylmGUI does not have Gene names   Jagtar Singh Nijjar [guest]
• [BioC] getSequence with biomaRt   Marc Carlson
• [BioC] getSequence with biomaRt   Michael Gormley
• [BioC] Bug report.   Yuan Hao
• [BioC] Bug report.   Sean Davis
• [BioC] edgeR glmFit -- how to define and test reduced, additive and interaction fitted models   Miguel Gallach
• [BioC] [R] Fwd: Rgraphviz installation problem   René Cluzel [guest]
• [BioC] affymetrix mirna 2.0 probe package   som [guest]
• [BioC] Limma question   Niccolò Bassani
• [BioC] limma: bg correction using neqc() w/ Agilent arrays   Hooiveld, Guido
• [BioC] minfi   khadeeja ismail
• [BioC] Extracting PROBE_ID from lumiBatch   Pan Du
• [BioC] about transcription factor binding site database   Zhi Zhang
• [BioC] MA plot for highthrouput qPCR array, shows bias?   Ali Mohammadian
• [BioC] normalize.invariantset(data, ref, prd.td=c(0.003,0.007))   Ali Mohammadian
• [BioC] about transcription factor binding site database   Steve Lianoglou
• [BioC] remove empty short read after using trimEnds   Kunbin Qu
• [BioC] EdgeR GLM   Gordon K Smyth
• [BioC] Difference between LIMMA and Genespring   Gordon K Smyth
• [BioC] limma: bg correction using neqc() w/ Agilent arrays   Wei Shi
• [BioC] remove empty short read after using trimEnds   Martin Morgan
• [BioC] Limma question   Gordon K Smyth
• [BioC] edgeR glmFit -- how to define and test reduced, additive and interaction fitted models   Gordon K Smyth
• [BioC] trim adapter with mismatch tolerance   Kunbin Qu
• [BioC] Limma question   Gordon K Smyth
• [BioC] HTqPCR and Biobase's eSet   Heidi Dvinge
• [BioC] HTqPCR package   Heidi Dvinge
• [BioC] limma: bg correction using neqc() w/ Agilent arrays   Hooiveld, Guido
• [BioC] HTqPCR   Heidi Dvinge
• [BioC] HTqPCR useful for ChIP data ?   Heidi Dvinge
• [BioC] MA plot for highthrouput qPCR array, shows bias?   Heidi Dvinge
• [BioC] Limma question   Niccolò Bassani
• [BioC] Questions about edgeR   Asma rabe
• [BioC] "reverse" a set of nucleotides: from reverse to direct sense   Jane Merlevede
• [BioC] Distance from TSS and CPG   khadeeja ismail
• [BioC] MA plot for highthrouput qPCR array, shows bias?   Ali Mohammadian
• [BioC] Analysis of Omni Express / Omni Express FFPE chips   Ed Schwalbe [guest]
• [BioC] LIMMA: extracting simple stats for factors and levels from lmfit   somnath bandyopadhyay
• [BioC] Combining raw images and locs files from different scans   Aliaksei Holik
• [BioC] trim adapter with mismatch tolerance   Harris A. Jaffee
• [BioC] biomaRt querry error   Assa Yeroslaviz
• [BioC] biomaRt querry error   James W. MacDonald
• [BioC] Announcement: NCI Second Symposium on Translational Genomics   Sean Davis
• [BioC] Combining raw images and locs files from different scans   Mike Smith
• [BioC] Difference between go, with_go and with_go_go   konika chawla
• [BioC] trim adapter with mismatch tolerance   Kunbin Qu
• [BioC] Questions about edgeR   Mark Robinson
• [BioC] trim adapter with mismatch tolerance   Harris A. Jaffee
• [BioC] LIMMA: extracting simple stats for factors and levels from lmfit   Gordon K Smyth
• [BioC] Questions about edgeR   Asma rabe
• [BioC] Questions about edgeR   Mark Robinson
• [BioC] Questions about edgeR   Asma rabe
• [BioC] Questions about edgeR   Mark Robinson
• [BioC] Questions about edgeR   Asma rabe
• [BioC] LIMMA: extracting simple stats for factors and levels from lmfit   somnath bandyopadhyay
• [BioC] "reverse" a set of nucleotides: from reverse to direct sense   Michael Lawrence
• [BioC] besides batch effects, whether adjust for specific quality metric variables (pos_control_mean, neg_control_mean, etc) in the analysis models   shirley zhang
• [BioC] besides batch effects, whether adjust for specific quality metric variables (pos_control_mean, neg_control_mean, etc) in the analysis models   Kasper Daniel Hansen
• [BioC] besides batch effects, whether adjust for specific quality metric variables (pos_control_mean, neg_control_mean, etc) in the analysis models   shirley zhang
• [BioC] TCGA_HumanMethylation27_upload   Magdalena Wozniak
• [BioC] TCGA_HumanMethylation27_upload   Sean Davis
• [BioC] limma - 2-color agilent microarray, GO annotation   Stephen Turner
• [BioC] on job opening announcements - was: Re: limma - 2-color agilent microarray, GO annotation   Wolfgang Huber
• [BioC] trim adapter with mismatch tolerance   Harris A. Jaffee
• [BioC] Combining raw images and locs files from different scans   Salvador
• [BioC] Contrasts for 3x2 factorial experiment in R/edgeR   Benjamin King
• [BioC] problems with pd.genomewidesnp.6   Sebastian Thieme
• [BioC] Fwd: problems with pd.genomewidesnp.6   Benilton Carvalho
• [BioC] Bioconductor resources for immunology   January Weiner
• [BioC] Affymetrix Mouse Gene 1.0 ST - Number of probes   Sophie LAMARRE [guest]
• [BioC] problems with pd.genomewidesnp.6   MacDonald, James
• [BioC] Affymetrix Mouse Gene 1.0 ST - Number of probes   MacDonald, James
• [BioC] Limma question   asas asasa
• [BioC] "reverse" a set of nucleotides: from reverse to direct sense   Jane Merlevede
• [BioC] limma: adding weights to mroast   Anthoula Gaigneaux
• [BioC] "reverse" a set of nucleotides: from reverse to direct sense   Michael Lawrence
• [BioC] Combining raw images and locs files from different scans   Mike Smith
• [BioC] Bioconductor Digest, Vol 106, Issue 21   Jing Huang
• [BioC] biomaRt access to ensemble genomes 11 fungi_mart_11   Cook, Malcolm
• [BioC] biomaRt access to ensemble genomes 11 fungi_mart_11   Sebastian Thieme
• [BioC] biomaRt access to ensemble genomes 11 fungi_mart_11   Cook, Malcolm
• [BioC] "reverse" a set of nucleotides: from reverse to direct sense   Valerie Obenchain
• [BioC] processSwathData for HumanHT-12 v4   Stephen Edwards
• [BioC] DEXSeq without replicates?   Duke
• [BioC] DEXSeq without replicates?   Simon Anders
• [BioC] DEXSeq without replicates?   Duke
• [BioC] the diffrent alignment result between pairwiseAlignment() in Biostrings package and EBI-webserver   cao zongfu
• [BioC] expression array normalization and different comparisons: an only "total" normalization or a normalization per comparison?   ana garcia
• [BioC] Fwd: seeking help on cghMCR pleeeease   nac
• [BioC] processSwathData for HumanHT-12 v4   Mike Smith
• [BioC] the diffrent alignment result between pairwiseAlignment() in Biostrings package and EBI-webserver   Martin Morgan
• [BioC] ComBat output header line   Lilach Traivish
• [BioC] ComBat output header line   Dan Tenenbaum
• [BioC] ComBat output header line   Lilach Traivish
• [BioC] can't downlaod package "beadarrayExampleData"   易士 路
• [BioC] can't downlaod package "beadarrayExampleData"   Dan Tenenbaum
• [BioC] ComBat output header line   Lilach Traivish
• [BioC] Package davidTiling not available   harsha [guest]
• [BioC] Package davidTiling not available   harsha [guest]
• [BioC] Package davidTiling not available   Dan Tenenbaum
• [BioC] help   Roger [guest]
• [BioC] help   Steve Lianoglou
• [BioC] a question about how to use ChIPseqR   Valerie Obenchain
• [BioC] can't downlaod package "beadarrayExampleData"   Dan Tenenbaum
• [BioC] Analysis of Omni Express / Omni Express FFPE chips   Valerie Obenchain
• [BioC] minfi   Valerie Obenchain
• [BioC] ComBat output header line   Dan Tenenbaum
• [BioC] lumi and 450k control probe files   Oliver Hofmann
• [BioC] LIMMA : trying to take contrast of non estimable coefficient   Guillaume Meurice
• [BioC] normalizing time course RNA-Seq data   AKSR
• [BioC] LIMMA : trying to take contrast of non estimable coefficient   James W. MacDonald
• [BioC] LIMMA : trying to take contrast of non estimable coefficient   Guillaume Meurice
• [BioC] expression array normalization and different comparisons: an only "total" normalization or a normalization per comparison?   mjonczyk
• [BioC] Limma question   mjonczyk
• [BioC] Help on alternative and efficient data frame manipulation   Zhu, Lihua (Julie)
• [BioC] Help on alternative and efficient data frame manipulation   Steve Lianoglou
• [BioC] Help on alternative and efficient data frame manipulation   Zhu, Lihua (Julie)
• [BioC] Help on alternative and efficient data frame manipulation   Zhu, Lihua (Julie)
• [BioC] Help on alternative and efficient data frame manipulation   Steve Lianoglou
• [BioC] Help on alternative and efficient data frame manipulation   Zhu, Lihua (Julie)
• [BioC] Fwd: the diffrent alignment result between pairwiseAlignment() in Biostrings package and EBI-webserver   cao zongfu
• [BioC] installation of Rsamtools   Cornelia Vesely [guest]
• [BioC] installation of Rsamtools   James W. MacDonald
• [BioC] repost: installation of Rsamtools   Cornelia Vesely [guest]
• [BioC] repost: installation of Rsamtools   Steve Lianoglou
• [BioC] pdf report in ShortRead   Kavita Garg [guest]
• [BioC] pdf report in ShortRead   Dan Tenenbaum
• [BioC] lumiHumanAll.db - wrong information in lumiHumanAllCHR for some probes?   Janet Young
• [BioC] lumiHumanAll.db - wrong information in lumiHumanAllCHR for some probes?   Vincent Carey
• [BioC] Fwd: the diffrent alignment result between pairwiseAlignment() in Biostrings package and EBI-webserver   Valerie Obenchain
• [BioC] installation of Rsamtools   Conny [guest]
• [BioC] installation of Rsamtools   Steve Lianoglou
• [BioC] rGADEM crashes on Ubuntu 10.04 64-bit   Dave S
• [BioC] Fwd: the diffrent alignment result between pairwiseAlignment() in Biostrings package and EBI-webserver   Valerie Obenchain
• [BioC] rGADEM crashes on Ubuntu 10.04 64-bit   Dan Tenenbaum

Last message date: Sat Dec 31 04:33:52 CET 2011
Archived on: Sat Dec 31 04:34:09 CET 2011

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