[BioC] Error with package ExpressionView

Kavita Garg [guest] guest at bioconductor.org
Sun Dec 4 11:25:58 CET 2011


I get an error while trying to run this from package "ExpressionView"


ExportEV(by,y,filename = "file.evf",description = description)

Error in function (classes, fdef, mtable)  : 
  unable to find an inherited method for function "annotation", for signature "matrix"

Here:
by = biclust object
y = matrix
description <- list( experiment=list(
title="Title", xaxislabel="x-Axis Label",yaxislabel="y-Axis Label", name="Author", lab="Address", abstract="Abstract", url="URL", annotation="Annotation", organism="Organism"), coldata=coldata, rowdata=rowdata)

Any suggestion would be great. 

thanks
kavit

 -- output of sessionInfo(): 


locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] grid      stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] ALL_1.4.11           eisa_1.6.0           genefilter_1.36.0    Category_2.20.0      isa2_0.3.1           ExpressionView_1.6.0 AnnotationDbi_1.16.5
 [8] Biobase_2.14.0       RSQLite_0.10.0       DBI_0.2-5            caTools_1.12         bitops_1.0-4.1       BiocInstaller_1.2.1  biclust_1.0.1       
[15] lattice_0.20-0       colorspace_1.1-0     MASS_7.3-16         

loaded via a namespace (and not attached):
 [1] annotate_1.32.0  GO.db_2.6.1      graph_1.32.0     GSEABase_1.16.0  IRanges_1.12.3   KEGG.db_2.6.1    RBGL_1.30.1      splines_2.14.0   survival_2.36-10
[10] tools_2.14.0     XML_3.4-3        xtable_1.6-0    

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