[BioC] Rsubread package not available?

[James W. MacDonald]

Hi Noah,

On 12/5/2011 4:09 PM, Noah Dowell wrote:
> Hello All,
>
> I am trying to use the Rsubread package which is supposedly available but I am getting the following warning message.

It is only available as a source package. If you are set up to build 
packages from source, you can simply add the argument type="source" to 
your biocLite() call.

Otherwise,

http://cran.r-project.org/bin/macosx/RMacOSX-FAQ.html#Installation-of-source-packages

Best,

Jim


> Thanks for your help.
>
> Best,
>
> Noah
>
>
>> source("http://www.bioconductor.org/biocLite.R")
> BiocInstaller version 1.2.1, ?biocLite for help
>>      biocLite("Rsubread")
> BioC_mirror: 'http://www.bioconductor.org'
> Using R version 2.14, BiocInstaller version 1.2.1.
> Installing package(s) 'Rsubread'
> Warning message:
> In getDependencies(pkgs, dependencies, available, lib) :
>    package ‘Rsubread’ is not available (for R version 2.14.0)
>
>
>> sessionInfo()
> R version 2.14.0 (2011-10-31)
> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
>
> locale:
> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> other attached packages:
> [1] BiocInstaller_1.2.1
>
> loaded via a namespace (and not attached):
> [1] tools_2.14.0
>
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-- 
James W. MacDonald, M.S.
Biostatistician
Douglas Lab
University of Michigan
Department of Human Genetics
5912 Buhl
1241 E. Catherine St.
Ann Arbor MI 48109-5618
734-615-7826

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