[BioC] biomaRt access to ensemble genomes 11 fungi_mart_11

[Sebastian Thieme]

Hi Malcolm,

I have a older version of biomaRt 2.6.0 but I think it doesn't matter.
If you make

library("biomaRt")
listMarts()

you get all available marts if your mart is not listed it is not
available right now. In my version is only fungi_mart_10 ( ENSEMBL
FUNGI VARIATION 10 (EBI UK)) available.

fungi_mart <- useMart("fungi_mart_10")

I hope this helps a little bit.

Best

Basti

2011/12/22 Cook, Malcolm <MEC at stowers.org>:
> I dont see
>
>  fungi_mart_11  ftp://ftp.ensemblgenomes.org/pub/current/current/fungi/mysql/fungi_mart_11
>
> available when I listMarts
>
> Can anyone advise what I need to do to access either or both these ensembl genomes marts?
>
> Thanks!
>
> Malcolm Cook
> Computational Biology - Stowers Institute for Medical Research
>
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