[BioC] repost: installation of Rsamtools

Cornelia Vesely [guest] guest at bioconductor.org
Thu Dec 29 15:39:52 CET 2011


I got a new PC running on ubuntu and tried to install the Rsamtools
package.
got the following error:
> source("http://www.bioconductor.org/biocLite.R")
> biocLite("Rsamtools")
  Warning message:
   In getDependencies(pkgs, dependencies, available, lib) :        package ´Rsamtools´ is not available

does that mean that this package is not available for my linux
distribution??

 thank you
 conny


-- output of sessionInfo():
R version 2.10.1 (2009-12-14) 
x86_64-pc-linux-gnu 

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=C              LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base


 -- output of sessionInfo(): 

> source("http://www.bioconductor.org/biocLite.R")
> biocLite("Rsamtools")
  Warning message:
   In getDependencies(pkgs, dependencies, available, lib) :        package ´Rsamtools´ is not available

-- output of sessionInfo():
R version 2.10.1 (2009-12-14) 
x86_64-pc-linux-gnu 

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=C              LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

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