[BioC] help

[Roger [guest]]

1) I've subsribed and confirmed.  Where's the url for the forum?  It would be nice to have the forum url listed on the page after one logs on.

2) I've installed the new R 2.14.0.  Why are so many basic packages still not available?  (tcltk,bawse, stats, utils, SparceM, datasets, grDevices, graphics, ...)

3) I tried to load the xcm from Bioconductor but it failed, message below:

 -- output of sessionInfo(): 

> source("http://bioconductor.org/biocLite.R")
biocLite("xcms")
BiocInstaller version 1.2.1, ?biocLite for help
> BioC_mirror: 'http://www.bioconductor.org'
Using R version 2.14, BiocInstaller version 1.2.1.
Installing package(s) 'xcms'
trying URL 'http://www.bioconductor.org/packages/2.9/bioc/src/contrib/xcms_1.30. 3.tar.gz'
Content type 'application/x-gzip' length 1949003 bytes (1.9 Mb)
opened URL
==================================================
downloaded 1.9 Mb

* installing *source* package 'xcms' ...
** libs
rm -f massifquant/xcms_massifquant.o massifquant/TrMgr.o massifquant/Tracker.o m assifquant/SegProc.o massifquant/DataKeeper.o massifquant/OpOverload.o obiwarp/m at.o obiwarp/vec.o obiwarp/xcms_dynprog.o obiwarp/xcms_lmat.o obiwarp/xcms_obiwa rp.o fastMatch.o mzClust_hclust.o mzROI.o netCDF.o ramp_base64.o ramp.o rampR.o util.o xcms.o
CC -library=stlport4 -I/usr/local/bin/R-2.14.0/include -I/usr/local/include -I/s w/include -D_LARGEFILE_SOURCE -I/usr/local/include    -Kpic  -xO5 -xlibmil -nofs tore -features=tmplrefstatic -m64 -c massifquant/xcms_massifquant.cpp -o massifq uant/xcms_massifquant.o
"massifquant/DataKeeper.h", line 11: Error: __int64_t is not defined.
"massifquant/DataKeeper.h", line 12: Error: __uint64_t is not defined.
"massifquant/DataKeeper.h", line 13: Error: __int32_t is not defined.
"massifquant/DataKeeper.h", line 14: Error: __uint32_t is not defined.
"massifquant/DataKeeper.h", line 15: Error: __int16_t is not defined.
"massifquant/DataKeeper.h", line 16: Error: __uint16_t is not defined.
6 Error(s) detected.
*** Error code 2
make: Fatal error: Command failed for target `massifquant/xcms_massifquant.o'
ERROR: compilation failed for package 'xcms'
* removing '/usr/local/bin/R-2.14.0/library/xcms'


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