September 2009 Archives by date

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Starting: Tue Sep 1 08:43:43 CEST 2009
Ending: Wed Sep 30 22:03:13 CEST 2009
Messages: 479

• [BioC] Rgraphviz: interactive graphs, how to map coordinates to plotted graph?   Rainer Machne
• [BioC] You Have 1 New Security Message   Alliance & Leicester
• [BioC] BioMart and Ensembl questions   jiayu wen
• [BioC] error with accessing GEOquery data   Kishor Tappita
• [BioC] error with accessing GEOquery data   Sean Davis
• [BioC] error with accessing GEOquery data   Kishor Tappita
• [BioC] mas5 packages Background Correct Error   yuduanding
• [BioC] mas5 packages Background Correct Error   James W. MacDonald
• [BioC] Ringo package: error using computeRunningMedians function   Joern Toedling
• [BioC] Installing Bioconductor with 'sudo' privilege   Sharon
• [BioC] Installing Bioconductor with 'sudo' privilege   amit mandal
• [BioC] Installing Bioconductor with 'sudo' privilege   Sean Davis
• [BioC] Installing Bioconductor with 'sudo' privilege   Steve Lianoglou
• [BioC] Installing Bioconductor with 'sudo' privilege   Wolfgang Huber
• [BioC] Installing Bioconductor with 'sudo' privilege   Joern Toedling
• [BioC] Installing Bioconductor with 'sudo' privilege   Sean Davis
• [BioC] labRow function in KEGG2heatmap   Lina Cekaite
• [BioC] preprocessing Affymetrix with threestep and expresso   Javier Pérez Florido
• [BioC] preprocessing Affymetrix with threestep and expresso   Laurent Gautier
• [BioC] obtain DNA sequence   Biddie, Simon (NIH/NCI) [F]
• [BioC] labRow function in KEGG2heatmap   Saurin D. Jani
• [BioC] obtain DNA sequence   Patrick Aboyoun
• [BioC] obtain DNA sequence   Biddie, Simon (NIH/NCI) [F]
• [BioC] preprocessing Affymetrix with threestep and expresso (reply and note on xps)   cstrato
• [BioC] obtain DNA sequence   Patrick Aboyoun
• [BioC] read coverage per transcript for RNASeq   Jessica Hunter
• [BioC] Fred Hutchinson Cancer Research Center - Systems Analyst/Programmer III/IV (AD-22564)   Duran, Alysha M
• [BioC] Installing Bioconductor with 'sudo' privilege   Sharon
• [BioC] read coverage per transcript for RNASeq   Martin Morgan
• [BioC] GOstats error   Sebastien Gerega
• [BioC] Riddhi International News   Sanjeev Prajapati
• [BioC] GOstats error   Al Ivens
• [BioC] labRow function in KEGG2heatmap   Lina Cekaite
• [BioC] Der King Of Pop lebt   Adriaens-Allie
• [BioC] Differentially Expressed Genes using Limma   Marcos Pinho
• [BioC] read coverage per transcript for RNASeq   Jessica Hunter
• [BioC] Differentially Expressed Genes using Limma   James W. MacDonald
• [BioC] read coverage per transcript for RNASeq   Martin Morgan
• [BioC] limma's implementation of VSN   Hooiveld, Guido
• [BioC] limma's implementation of VSN   Wolfgang Huber
• [BioC] labRow function in KEGG2heatmap   Saurin D. Jani
• [BioC] limma's implementation of VSN   Hooiveld, Guido
• [BioC] Rgraphviz: interactive graphs, how to map coordinates to plotted graph?   Florian Hahne
• [BioC] Batch effect in limma   Yuan Hao
• [BioC] choosing explanatory variables for linear model in limma   Andre J. Aberer
• [BioC] limma's implementation of VSN   Wolfgang Huber
• [BioC] Neural networks.   Marcus Gry
• [BioC] internal error in package Rgraphviz: "cdt.dll not found"   Kasper Daniel Hansen
• [BioC] Batch effect in limma   James W. MacDonald
• [BioC] choosing explanatory variables for linear model in limma   James W. MacDonald
• [BioC] R package or function for ordinal predictors and continous response   shirley zhang
• [BioC] Neural networks.   Steve Lianoglou
• [BioC] Abbey Credit Card Payment.   Abbey National Bank Plc.
• [BioC] Batch effect in limma   James W. MacDonald
• [BioC] EBImage package loading error due to configuration of gtk   Patrick Zimmerman
• [BioC] EBImage package loading error due to configuration of gtk   Wolfgang Huber
• [BioC] EBImage package loading error due to configuration of gtk   Patrick Zimmerman
• [BioC] EBImage package loading error due to configuration of gtk   Gregoire Pau
• [BioC] problem with read.maimages wt.fun   gb606342000
• [BioC] GO.db and Gostats question   Tarca, Adi
• [BioC] GO.db and Gostats question   Marc Carlson
• [BioC] limma for identifying differentially expressed genes from illumina data   Wei Shi
• [BioC] Rgraphviz: interactive graphs   Rainer Machne
• [BioC] tiff format problem   carol white
• [BioC] Duplicate correlation error in limma   Paul Geeleher
• [BioC] Viel spass beim Schlank sein   Dr. Sabrina Heinze
• [BioC] multiple Affy normalization results in single object ?   Wolfgang Raffelsberger
• [BioC] tiff format problem   amit mandal
• [BioC] tiff format problem   Sean Davis
• [BioC] rtracklayer browserView   Giulio Di Giovanni
• [BioC] multiple Affy normalization results in single object ?   Martin Morgan
• [BioC] rtracklayer browserView   Giulio Di Giovanni
• [BioC] BioMart Error   Lakshmanan Iyer
• [BioC] read coverage per transcript for RNASeq   Jessica Hunter
• [BioC] automatically loading of annotation package   Markus Schmidberger
• [BioC] automatically loading of annotation package   James F. Reid
• [BioC] automatically loading of annotation package   Martin Morgan
• [BioC] RowInd (row index permutation vector )   Priscila Grynberg
• [BioC] read coverage per transcript for RNASeq   Martin Morgan
• [BioC] tiff format problem   carol white
• [BioC] tiff format problem   carol white
• [BioC] design matrix with limma   Diya v
• [BioC] RowInd (row index permutation vector )   James W. MacDonald
• [BioC] design matrix with limma   James MacDonald
• [BioC] Unbelievable! $600 just for joining!   Larry Cameron
• [BioC] RowInd (row index permutation vector )   Priscila Grynberg
• [BioC] limmaGUI - venn-diagram & top-table anomaly?   D.Levin at warwick.ac.uk
• [BioC] read.maimages & wt.fun   gb606342000
• [BioC] read.maimages & wt.fun   Martin Morgan
• [BioC] call of differential expression between close species using microarray data   pkuonline
• [BioC] Fred Hutchinson Cancer Research Center - Systems Analyst/Programmer III/IV (AD-22564)   Duran, Alysha M
• [BioC] You Don't Have to Quit Smoking. New Technology!   inLife E-Cigarettes
• [BioC] read.maimages & wt.fun   gb606342000
• [BioC] BioMart Error   Wolfgang Huber
• [BioC] Duplicate correlation error in limma   Gordon K Smyth
• [BioC] about citrus chip   yuduanding
• [BioC] Rgraphviz: multiple edges between nodes   Rainer Machne
• [BioC] regarding web interface to R coding   ankhee dutta
• [BioC] regarding web interface to R coding   Shameer Khadar
• [BioC] regarding web interface to R coding   Paul Geeleher
• [BioC] regarding web interface to R coding   Heidi Dvinge
• [BioC] regarding web interface to R coding   Fraser Sim
• [BioC] graphviz on fresh snow leopard   Tony Chiang
• [BioC] regarding web interface to R coding   Tim Rayner
• [BioC] regarding web interface to R coding   Michael Dondrup
• [BioC] regarding web interface to R coding   Martin Morgan
• [BioC] regarding web interface to R coding   Shameer Khadar
• [BioC] Duplicate correlation error in limma   Paul Geeleher
• [BioC] regarding web interface to R coding   Steve Lianoglou
• [BioC] problem in make.cdf.package of MoGene-1_0-st-v1.r3.CDF   Peng Yu
• [BioC] problem in make.cdf.package of MoGene-1_0-st-v1.r3.CDF   Benilton Carvalho
• [BioC] CDF File for Arabidopsis Tilling Array1.0F   Jie He
• [BioC] regarding web interface to R coding   ankhee dutta
• [BioC] biomaRt issues   Leonardo Collado Torres
• [BioC] regarding web interface to R coding   Michael Dondrup
• [BioC] regarding web interface to R coding   Sean Davis
• [BioC] Gene ID of yeast in GOSemSim and other GO related package may need update   Gang Chen
• [BioC] Problem installing RBGL 1.20.0 using Fedora 11 x64 and gcc 4.4.1   Philipp Antczak
• [BioC] result of linear model   Md.Mamunur Rashid
• [BioC] [Fwd: result of linear model]   Md.Mamunur Rashid
• [BioC] [Fwd: result of linear model]   Naomi Altman
• [BioC] analyzing HumanHT12 with lumi   stefanie.figura
• [BioC] biomaRt issues   Wolfgang Huber
• [BioC] regarding web interface to R coding   Vincent Carey
• [BioC] about citrus chip   James W. MacDonald
• [BioC] interaction term contrast in Weaver mutant example of LIMMA manual   Erika Melissari
• [BioC] Fwd: analyzing HumanHT12 with lumi   amit mandal
• [BioC] Error when running limma on low variance data   qq bioconductor
• [BioC] interaction term contrast in Weaver mutant example of LIMMA manual   James W. MacDonald
• [BioC] regarding web interface to R coding   Jeff Gentry
• [BioC] GO.db and Gostats question   Marc Carlson
• [BioC] automatically loading of annotation package   Chao-Jen Wong
• [BioC] We’re GIVING you your very own mall with 1200+ stores   Larry Cameron
• [BioC] limmaGUI - venn-diagram & top-table anomaly?   Keith Satterley
• [BioC] result of linear model   Gordon K Smyth
• [BioC] analyzing HumanHT12 with lumi   die_stevie at web.de
• [BioC] analyzing HumanHT12 with lumi   Paul Leo
• [BioC] analyzing HumanHT12 with lumi   die_stevie at web.de
• [BioC] analyzing HumanHT12 with lumi   die_stevie at web.de
• [BioC] interaction term contrast in Weaver mutant example of LIMMA manual   Erika Melissari
• [BioC] regarding web interface to R coding   Laurent Gautier
• [BioC] package of predicting a continuous variable from more than one continuous predictor variables   shirley zhang
• [BioC] [Fwd: problem : Detection-p.value column in Illumina HumanHT12 data]   Md.Mamunur Rashid
• [BioC] Creating LumiBatch object from ExpressionSet   Pan Du
• [BioC] package of predicting a continuous variable from more than one continuous predictor variables   Steve Lianoglou
• [BioC] package of predicting a continuous variable from more than one continuous predictor variables   shirley zhang
• [BioC] package of predicting a continuous variable from more than one continuous predictor variables   Steve Lianoglou
• [BioC] data inconsistence in Bionconductor   Lin Yang
• [BioC] package of predicting a continuous variable from more than one continuous predictor variables   shirley zhang
• [BioC] package of predicting a continuous variable from more than one continuous predictor variables   Steve Lianoglou
• [BioC] interaction term contrast in Weaver mutant example of LIMMA manual   James W. MacDonald
• [BioC] package of predicting a continuous variable from more than one continuous predictor variables   shirley zhang
• [BioC] multiple testing problem on array level   Tefina Paloma
• [BioC] IRanges : Strange behavior subsetting an IntervalTree with an indexing variable from within a function   Steve Lianoglou
• [BioC] IRanges : Strange behavior subsetting an IntervalTree with an indexing variable from within a function   Steve Lianoglou
• [BioC] analyzing HumanHT12 with lumi   Pan Du
• [BioC] regarding web interface to R coding   Shameer Khadar
• [BioC] problems with snapCGH readPositionalInfo processCGH   Dick Beyer
• [BioC] IRanges : Strange behavior subsetting an IntervalTree with an indexing variable from within a function   Steve Lianoglou
• [BioC] IRanges : Strange behavior subsetting an IntervalTree with an indexing variable from within a function   Martin Morgan
• [BioC] IRanges : Strange behavior subsetting an IntervalTree with an indexing variable from within a function   Steve Lianoglou
• [BioC] data inconsistence in Bionconductor   Marc Carlson
• [BioC] IRanges : Strange behavior subsetting an IntervalTree with an indexing variable from within a function   Patrick Aboyoun
• [BioC] about citrus chip (update of xps)   cstrato
• [BioC] Question on Interarray normalization   Anjan Purkayastha
• [BioC] Error when running limma on low variance data   Gordon K Smyth
• [BioC] graphviz on fresh snow leopard   Tony Chiang
• [BioC] analyzing HumanHT12 with lumi   die_stevie at web.de
• [BioC] How to compare GO results   Johannes Hanson
• [BioC] Creating LumiBatch object from ExpressionSet   Md.Mamunur Rashid
• [BioC] regarding package ArrayExpress   Amit Kumar
• [BioC] Job Vacancy ( Your present job not affected )   BJ Ball Group
• [BioC] package of predicting a continuous variable from more than one continuous predictor variables   Zeljko Debeljak
• [BioC] Job Vacancy ( Your present job not affected )   BJ Ball Group
• [BioC] regarding package ArrayExpress   audrey at ebi.ac.uk
• [BioC] regarding package ArrayExpress   Misha Kapushesky
• [BioC] regarding package ArrayExpress   Tim Rayner
• [BioC] regarding package ArrayExpress   audrey at ebi.ac.uk
• [BioC] regarding package ArrayExpress   audrey at ebi.ac.uk
• [BioC] regarding package ArrayExpress   Martin Morgan
• [BioC] Now you can smoke anywhere you want!   inLife E-Cigarettes
• [BioC] CDF File for Arabidopsis Tilling Array1.0F   Marc Carlson
• [BioC] Gene ID of yeast in GOSemSim and other GO related package may need update   Marc Carlson
• [BioC] Error when running limma on low variance data   Chao-Jen Wong
• [BioC] affy exon array analysis questions   zrl
• [BioC] affy exon array analysis questions   cstrato
• [BioC] D e ntists List in the USA   Farris germanium
• [BioC] Array Set - Multiple Testing Problem   Tefina Paloma
• [BioC] Array Set - Multiple Testing Problem   Sean Davis
• [BioC] analyzing HumanHT12 with lumi   die_stevie at web.de
• [BioC] Array Set - Multiple Testing Problem   Tefina Paloma
• [BioC] Array Set - Multiple Testing Problem   Mayer, Claus-Dieter
• [BioC] Array Set - Multiple Testing Problem   Sean Davis
• [BioC] Array Set - Multiple Testing Problem   Sean Davis
• [BioC] Array Set - Multiple Testing Problem   Steve Lianoglou
• [BioC] Array Set - Multiple Testing Problem   Sean Davis
• [BioC] Array Set - Multiple Testing Problem   Steve Lianoglou
• [BioC] Repeated gene entries on Toptable by limma   Marcos Pinho
• [BioC] Repeated gene entries on Toptable by limma   Chao-Jen Wong
• [BioC] Array Set - Multiple Testing Problem   Tefina Paloma
• [BioC] Repeated gene entries on Toptable by limma   Tefina Paloma
• [BioC] Using RCurl and XML to access an API   Aaron Wolen
• [BioC] Gene-Snp annotation   mohamed.lajnef at inserm.fr
• [BioC] Using RCurl and XML to access an API   Martin Morgan
• [BioC] Gene-snp matching   Mohamed Lajnef
• [BioC] Gene-snp matching   James W. MacDonald
• [BioC] Gene-snp matching   Bucher Elmar
• [BioC] annotation package for agilent rabbit expression arrays   Diya v
• [BioC] obtain DNA sequence   Hervé Pagès
• [BioC] Using RCurl and XML to access an API   Hervé Pagès
• [BioC] Lists of MDs and Dentists   Koch motet
• [BioC] affy exon array analysis questions   zrl
• [BioC] affy exon array analysis questions   cstrato
• [BioC] qaGeneST bug   Dick Beyer
• [BioC] regarding web interface to R coding   Hervé Pagès
• [BioC] Rgraphviz: multiple edges between nodes   Hervé Pagès
• [BioC] question about topTable ranking of limma   zrl
• [BioC] question about topTable ranking of limma   Heidi Dvinge
• [BioC] Ringo package: biological replicate correlation within cher (chip-enriched region)   Diego Villar
• [BioC] question about topTable ranking of limma   zrl
• [BioC] question about topTable ranking of limma   zrl
• [BioC] question about topTable ranking of limma   Mayer, Claus-Dieter
• [BioC] question about topTable ranking of limma   zrl
• [BioC] question about topTable ranking of limma   Jenny Drnevich
• [BioC] question about topTable ranking of limma   zrl
• [BioC] question about topTable ranking of limma   Jenny Drnevich
• [BioC] question about topTable ranking of limma   zrl
• [BioC] flowCore: inverse logicle transformation of flow cytometry data   spyne at broadinstitute.org
• [BioC] error with accessing biomaRt attributes   Kishor Tappita
• [BioC] Gene-snp matching   Mohamed Lajnef
• [BioC] Using RCurl and XML to access an API   Aaron Wolen
• [BioC] error with accessing biomaRt attributes   Steve Lianoglou
• [BioC] Error while trying to use Genefilter   Marcos Pinho
• [BioC] Error while trying to use Genefilter   Jenny Drnevich
• [BioC] Gene Ontology analysis for non-affy data   Yupu Liang
• [BioC] Gene Ontology analysis for non-affy data   Marc Carlson
• [BioC] Gene Ontology analysis for non-affy data   Chao-Jen Wong
• [BioC] flowCore: inverse logicle transformation of flow cytometry data   Chao-Jen Wong
• [BioC] error with accessing biomaRt attributes   Chao-Jen Wong
• [BioC] Gene Ontology analysis for non-affy data   Marc Carlson
• [BioC] flowCore: inverse logicle transformation of flow cytometry data   spyne at broadinstitute.org
• [BioC] "rtracklayer" is not compatible with the lateset "IRanges" package   LiGang
• [BioC] error with accessing biomaRt attributes   Kishor Tappita
• [BioC] "rtracklayer" is not compatible with the lateset "IRanges" package   Michael Lawrence
• [BioC] (no subject)   LiGang
• [BioC] (no subject)   Patrick Aboyoun
• [BioC] annotation and GO for non-model organism   Ingunn Berget
• [BioC] Compiling graph on solaris   Mark Cowley
• [BioC] annotation and GO for non-model organism   Wolfgang Huber
• [BioC] error with display of significant nodes using topGO   Kishor Tappita
• [BioC] error with "retrain" method of gene2pathway package   Kishor Tappita
• [BioC] BioC 2010 European Developers' meeting   Crispin Miller
• [BioC] Heatmap_plus & distfun   vivek modi
• [BioC] error with "retrain" method of gene2pathway package   James W. MacDonald
• [BioC] Heatmap_plus & distfun   Wolfgang Huber
• [BioC] error with display of significant nodes using topGO   Adrian Alexa
• [BioC] Heatmap_plus & distfun   Heidi Dvinge
• [BioC] error with display of significant nodes using topGO   Kishor Tappita
• [BioC] error with "retrain" method of gene2pathway package   Kishor Tappita
• [BioC] Gene Ontology analysis for non-affy data   Adrian Alexa
• [BioC] Strange FDR values using GSA package with large numbers of permutations   Alexander C Cambon
• [BioC] annotation and GO for non-model organism   Marc Carlson
• [BioC] Limma package: problem with p-value and t   Julie Zhu
• [BioC] Limma package: problem with p-value and t   James W. MacDonald
• [BioC] Limma package: problem with p-value and t   Julie Zhu
• [BioC] Limma package: problem with p-value and t   James W. MacDonald
• [BioC] flowCore: inverse logicle transformation of flow cytometry data   Chao-Jen Wong
• [BioC] NOTE: bioconductor.org system maintenance; planned downtime 12pm-1pm PDT Friday 9/18   Patrick Aboyoun
• [BioC] bioconductor.org will be down on Friday 18 noon-1pm Seattle time   Hervé Pagès
• [BioC] Compiling graph on solaris   Hervé Pagès
• [BioC] How to modify PM/MM intensity values   Javier Perez Florido
• [BioC] Strange FDR values using GSA package with large numbers of permutations   Wolfgang Huber
• [BioC] How to modify PM/MM intensity values   James W. MacDonald
• [BioC] Ftp Proxy Error in GEO query   Sailu Yellaboina
• [BioC] Ftp Proxy Error in GEO query   Sean Davis
• [BioC] Technical Replicates with Affymetrix Exon Arrays   Marcos Pinho
• [BioC] Technical Replicates with Affymetrix Exon Arrays   Sean Davis
• [BioC] Compiling graph on solaris   Aric Gregson
• [BioC] Compiling graph on solaris   Hervé Pagès
• [BioC] AnnotationDBI   Denise Mauldin
• [BioC] AnnotationDBI   Marc Carlson
• [BioC] bioconductor.org will be down on Friday 18 noon-1pm Seattle time   Hervé Pagès
• [BioC] AnnotationDBI   Tim Triche
• [BioC] AnnotationDBI   Sean Davis
• [BioC] Announcement: Deadline for new package submission   Nishant Gopalakrishnan
• [BioC] AnnotationDBI   Marc Carlson
• [BioC] What should be in databases.txt for exonmap?   Peng Yu
• [BioC] Where classification worked better ?   santana sarma
• [BioC] [limma] Possible bug on read.maimages function ?   Marcelo Laia
• [BioC] Where classification worked better ?   Tarca, Adi
• [BioC] Bioconductor Digest, Vol 79, Issue 20   Gordon K Smyth
• [BioC] Westpac Account Information   Westpac Banking Corporation
• [BioC] OFF TOPIC high-density SSU rRNA microarray   Marcelo Laia
• [BioC] Different expression direction between limma microarray data analysis vs quantitative real time PCR result   jixinwang at tamu.edu
• [BioC] Different expression direction between limma microarray data analysis vs quantitative real time PCR result   Naomi Altman
• [BioC] scan date information   Robert Dunne
• [BioC] scan date information   Saroj K Mohapatra
• [BioC] BioMart and Ensembl questions !!!   Paul Leo
• [BioC] BioMart and Ensembl questions !!!   Rhoda Kinsella
• [BioC] BioMart and Ensembl questions !!!   Rhoda Kinsella
• [BioC] BioMart and Ensembl questions !!!   Paul Leo
• [BioC] BioMart and Ensembl questions !!!   Rhoda Kinsella
• [BioC] lumi and Affy bgadjust   parantu shah
• [BioC] BioMart and Ensembl questions !!!   Paul Leo
• [BioC] Different expression direction between limma microarray data analysis vs quantitative real time PCR result   Francois Pepin
• [BioC] BioMart and Ensembl questions !!!   Rhoda Kinsella
• [BioC] BioMart and Ensembl questions !!!   James W. MacDonald
• [BioC] Different expression direction between limma microarray data analysis vs quantitative real time PCR result   Wang, Jixin
• [BioC] BioMart and Ensembl questions !!!   James W. MacDonald
• [BioC] scan date information   Patrick Aboyoun
• [BioC] lumi and Affy bgadjust   Pan Du
• [BioC] Different expression direction between limma microarray data analysis vs quantitative real time PCR result   Chao-Jen Wong
• [BioC] YEAST package   suman Duvvuru
• [BioC] YEAST package   suman Duvvuru
• [BioC] lumi and Affy bgadjust   Simon Lin
• [BioC] YEAST package   Marc Carlson
• [BioC] BioMart and Ensembl questions !!!   Steffen at stat.Berkeley.EDU
• [BioC] scan date information   Rob Dunne
• [BioC] Different expression direction between limma microarray data analysis vs quantitative real time PCR result   Wang, Jixin
• [BioC] BioMart and Ensembl questions !!!   Paul Leo
• [BioC] scan date information   Mark Cowley
• [BioC] is www.bioconductor.org down??   Mark Cowley
• [BioC] Compiling graph on solaris   Mark Cowley
• [BioC] is www.bioconductor.org down??   Thomas Hampton
• [BioC] limma technical replicates and biological replicates in the same design   Marcelo Laia
• [BioC] Compiling graph on solaris   Mark Cowley
• [BioC] is www.bioconductor.org down??   Mark Cowley
• [BioC] can not coerce CompressedIntegerList to vector or integer in 'IRanges' package   LiGang
• [BioC] Now it's easy to promote your business to doctors   radcliffe
• [BioC] browserView does not work in 'rtracklayer' [failure to coerce "CompressedIntegerList"]   LiGang
• [BioC] BioMart and Ensembl questions !!!   jiayu wen
• [BioC] Bioconductor does not provide Humane gene ST annotation "hugene10stv1cdf" to work with affylmGUI?!   Prazeres da Costa Olivia
• [BioC] limma technical replicates and biological replicates in the same design   Naomi Altman
• [BioC] BioMart Error   Wolfgang Huber
• [BioC] Different expression direction between limma microarray data analysis vs quantitative real time PCR result   Jenny Drnevich
• [BioC] can not coerce CompressedIntegerList to vector or integer in 'IRanges' package   Patrick Aboyoun
• [BioC] Different expression direction between limma microarray data analysis vs quantitative real time PCR result   zhaodj
• [BioC] microarray analysis in R without replicates   Rainer Tischler
• [BioC] microarray analysis in R without replicates   Thomas Hampton
• [BioC] limma technical replicates and biological replicates in same design   Gordon K Smyth
• [BioC] ArrayExpress as NChannelSet data into limma-compatible type   Chris Fjell
• [BioC] Questions regarding hclust parameters and output   Dana Sevak
• [BioC] Different expression direction between limma microarray data analysis vs quantitative real time PCR result   Wang, Jixin
• [BioC] ArrayExpress as NChannelSet data into limma-compatible type   Martin Morgan
• [BioC] can not coerce CompressedIntegerList to vector or integer in 'IRanges' package   Michael Lawrence
• [BioC] browserView does not work in 'rtracklayer' [failure to coerce "CompressedIntegerList"]   Michael Lawrence
• [BioC] can not coerce CompressedIntegerList to vector or integer in 'IRanges' package   Patrick Aboyoun
• [BioC] microarray analysis in R without replicates   Naomi Altman
• [BioC] biomaRt vs biomart.org   Tefina Paloma
• [BioC] biomaRt vs biomart.org   Tefina Paloma
• [BioC] biomaRt vs biomart.org   Sean Davis
• [BioC] biomaRt vs biomart.org   Tefina Paloma
• [BioC] rgraphviz: node attributes of a layout graph   Laurin Müller
• [BioC] microarray analysis in R without replicates   Groot, Philip de
• [BioC] Bioconductor does not provide Humane gene ST, annotation "hugene10stv1cdf" to work with affylmGUI?!   rcaloger
• [BioC] snapCGH and processCGH   lakshmi dhevi
• [BioC] Bioconductor does not provide Humane gene ST annotation "hugene10stv1cdf" to work with affylmGUI?!   Marc Carlson
• [BioC] Arrays with more than four replicates of each probe   Peder Worning
• [BioC] Help on contrast matrix Limma   jeremy wilson
• [BioC] Reactome Pathway Database User Survey   Robin Haw
• [BioC] Retrieve Entrez IDs for enriched GO terms   Yuan Hao
• [BioC] Retrieve Entrez IDs for enriched GO terms   Heidi Dvinge
• [BioC] Retrieve Entrez IDs for enriched GO terms   Yuan Hao
• [BioC] Retrieve Entrez IDs for enriched GO terms   michael watson (IAH-C)
• [BioC] Retrieve Entrez IDs for enriched GO terms   Heidi Dvinge
• [BioC] Retrieve Entrez IDs for enriched GO terms   Yuan Hao
• [BioC] Retrieve Entrez IDs for enriched GO terms   Sean Davis
• [BioC] Problem installing affy in Debian lenny 64 bits   Sofia Braga
• [BioC] Pfunde verlieren   Dr. Sabrina Stanzel
• [BioC] biomaRt vs biomart.org   Tefina Paloma
• [BioC] Retrieve Entrez IDs for enriched GO terms   michael watson (IAH-C)
• [BioC] rma error on an affyBatch from ArrayExpress?   Ross Lazarus
• [BioC] rma error on an affyBatch from ArrayExpress?   Martin Morgan
• [BioC] Problem installing affy in Debian lenny 64 bits   Martin Morgan
• [BioC] rma error on an affyBatch from ArrayExpress?   Ross Lazarus
• [BioC] flowjo export/concatenate and flowCore   Tiffany Chen
• [BioC] flowjo export/concatenate and flowCore   Nishant Gopalakrishnan
• [BioC] flowjo export/concatenate and flowCore   Tiffany Chen
• [BioC] ArrayExpress as NChannelSet data into limma-compatible type   Chris Fjell
• [BioC] Retrieve Entrez IDs for enriched GO terms   Marc Carlson
• [BioC] chrome coordinates are not same between Ensembl and Affy's annotation file   shirley zhang
• [BioC] Calculating mean values corresponding to duplicate row names   Hari Easwaran
• [BioC] chrome coordinates are not same between Ensembl and Affy's annotation file   James W. MacDonald
• [BioC] chrome coordinates are not same between Ensembl and Affy's annotation file   shirley zhang
• [BioC] chrome coordinates are not same between Ensembl and Affy's annotation file   James W. MacDonald
• [BioC] Calculating mean values corresponding to duplicate row names   Sean Davis
• [BioC] creating heatmap using LIMMA output (topTable data)   Dhiraj Naik
• [BioC] Retrieve Entrez IDs for enriched GO terms   Yuan Hao
• [BioC] Retrieve Entrez IDs for enriched GO terms   Yuan Hao
• [BioC] Conservation tracks in BioC?   Paul Leo
• [BioC] chrome coordinates are not same between Ensembl and Affy's annotation file   shirley zhang
• [BioC] Conservation tracks in BioC?   Marc Carlson
• [BioC] Help on contrast matrix Limma   Gordon K Smyth
• [BioC] Conservation tracks in BioC?   Paul Leo
• [BioC] exon array annotation files   Paul Leo
• [BioC] exon array annotation files   Benilton Carvalho
• [BioC] a little error in 'rtracklayer' vignette   LiGang
• [BioC] About xps Unifiter   yuduanding
• [BioC] exon array annotation files   Michal Okoniewski
• [BioC] mixed models analysis with limma   Christian Brière
• [BioC] only 9-digit refseq IDs when using custom CDF for mouse4302 array   Jarek Bryk
• [BioC] getSequence: difference between coding_gene_flank and 5utr   Tefina Paloma
• [BioC] Skandal Britney Spears tot   Dr. Sabrina Froehlich
• [BioC] About xps Unifiter   cstrato
• [BioC] failure to install: aCGH depends on unavailable package   Ramon Diaz-Uriarte
• [BioC] Help on contrast matrix Limma   jeremy wilson
• [BioC] failure to install: aCGH depends on unavailable package   Patrick Aboyoun
• [BioC] failure to install: aCGH depends on unavailable package   Ramon Diaz-Uriarte
• [BioC] sma package moved to archived status (was Re: failure to install: aCGH depends on unavailable package)   Patrick Aboyoun
• [BioC] merging columns of large data sets   Amit Kumar
• [BioC] [Bioc-devel] sma package moved to archived status (was Re: failure to install: aCGH depends on unavailable package)   Vincent Carey
• [BioC] merging columns of large data sets   Martin Morgan
• [BioC] Calculating probe affinities directly from sequence data - GCRMA   Steve Pederson
• [BioC] [Bioc-devel] sma package moved to archived status (was Re: failure to install: aCGH depends on unavailable package)   Wolfgang Huber
• [BioC] How to get platform annotation in ExpressionSet object   Sailu Yellaboina
• [BioC] How to get platform annotation in ExpressionSet object   Sean Davis
• [BioC] mixed models analysis with limma   Gordon K Smyth
• [BioC] From pilot to a large study   Mark Cowley
• [BioC] Reply:Re: About xps Unifiter   yuduanding
• [BioC] a little error in 'rtracklayer' vignette   Michael Lawrence
• [BioC] Fitting arrayweights in linear model   Md.Mamunur Rashid
• [BioC] COURSE: R and Microarray Analysis in R courses from Imperial College   North, Bernard V
• [BioC] getSequence: difference between coding_gene_flank and 5utr   Rhoda Kinsella
• [BioC] TopGO: How to retrieve the gene list related to a GO ID ?   Jean-Pierre Desvignes
• [BioC] mixed models analysis with limma   Christian Brière
• [BioC] TopGO: How to retrieve the gene list related to a GO ID ?   Ricardo
• [BioC] getSequence: difference between coding_gene_flankand 5utr   Tefina Paloma
• [BioC] TopGO: How to retrieve the gene list related to a GO ID ?   Jean-Pierre Desvignes
• [BioC] Take a break from your FPS and try Evony!   admin
• [BioC] mixed models analysis with limma   Gordon K Smyth
• [BioC] Snp matching   Mohamed Lajnef
• [BioC] Snp matching   Rhoda Kinsella
• [BioC] Ensembl mart release 56: Useful information   Rhoda Kinsella
• [BioC] Snp matching   Mohamed Lajnef
• [BioC] Snp matching   Rhoda Kinsella
• [BioC] Take a break from your FPS and try Evony!   James W. MacDonald
• [BioC] Job advertisement   Alexandre Kuhn
• [BioC] Snp matching   Hotz, Hans-Rudolf
• [BioC] Problem installing RMAGEML   Md.Mamunur Rashid
• [BioC] Snp matching   Martin Morgan
• [BioC] [Fwd: Problem installing RMAGEML]   Md.Mamunur Rashid
• [BioC] Snp matching   Mohamed Lajnef
• [BioC] Snp matching   Martin Morgan
• [BioC] Snp matching   James W. MacDonald
• [BioC] Problem using write.FCS in flowCore 1.11.20   Robert Bruggner
• [BioC] Problem using write.FCS in flowCore 1.11.20   Nishant Gopalakrishnan
• [BioC] Bioconductor Digest, Vol 79, Issue 24   Hari Easwaran
• [BioC] Help with rearranging dataframe   Hari Easwaran
• [BioC] Help with rearranging dataframe   Sean Davis
• [BioC] Error normalizing merged data sets   Amit Kumar
• [BioC] Help with rearranging dataframe   Sean Davis
• [BioC] Help with rearranging dataframe   Hari Easwaran
• [BioC] Bioconductor Digest, Vol 79, Issue 24   Tim Triche
• [BioC] Problem using write.FCS in flowCore 1.11.20   Nishant Gopalakrishnan
• [BioC] Error normalizing merged data sets   Mark Cowley
• [BioC] info   vikas sharma
• [BioC] Fitting arrayweights in linear model   Wei Shi
• [BioC] Hypergraph representation of reactions   Anand Gavai
• [BioC] I share annotation libraries for the Gene Titan plates   Groot, Philip de
• [BioC] COURSE: Introduction to Metabolomics and biomarker research   Matthias Kohl
• [BioC] urgent help   vikas sharma
• [BioC] urgent help   Sean Davis
• [BioC] urgent help   Ingunn Berget
• [BioC] urgent help   Sean Davis
• [BioC] lumi package   Weiwei Shi
• [BioC] lumi package   Steve Lianoglou
• [BioC] Changes in lumi in 2.9.2?   Michal Blazejczyk
• [BioC] problem with nsFilter and hthgu133a format eset   Fraser Sim
• [BioC] lumi package   Weiwei Shi
• [BioC] lumi package   Steve Lianoglou
• [BioC] lumi package   Weiwei Shi
• [BioC] lumi package   Steve Lianoglou
• [BioC] lumi package   Martin Morgan
• [BioC] lumi package   Weiwei Shi
• [BioC] lumi package   Steve Lianoglou
• [BioC] lumi package   Sean Davis
• [BioC] lumi package   Weiwei Shi
• [BioC] lumi package   Benilton Carvalho
• [BioC] problem with nsFilter and hthgu133a format eset   Marc Carlson

Last message date: Wed Sep 30 22:03:13 CEST 2009
Archived on: Mon Oct 5 18:58:31 CEST 2009

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