[BioC] "rtracklayer" is not compatible with the lateset "IRanges" package
LiGang
luzifer.li at gmail.com
Thu Sep 17 05:14:25 CEST 2009
the newest "rtracklayer" and "IRanges" packages are not compatible, is it
because class "ANYTHING" is not defined in package "IRanges" since version
1.3.73 anymore?
library(rtracklayer)
Loading required package: RCurl
Loading required package: bitops
browserSession("UCSC")->inter
range(inter)
###error!
#Error in validObject(.Object) :
# invalid class "ucscCart" object: superclass "ANYTHING" not defined in the
#environment of the object's class
rtracklayer:::ucscCart(inter)
###error!
#Error in validObject(.Object) :
# invalid class "ucscCart" object: superclass "ANYTHING" not defined in the
#environment of the object's class
getClass("ANYTHING",where=getNamespace("IRanges"))
##error! "ANYTHING" is not defined in package "IRanges" since version 1.3.75
#anymore
#Error in getClass("ANYTHING", where = getNamespace("IRanges")) :
# "ANYTHING" is not a defined class
sessionInfo()
R version 2.10.0 Under development (unstable) (2009-09-14 r49685)
i386-pc-mingw32
locale:
[1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252
LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C LC_TIME=English_United States.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] rtracklayer_1.5.13 RCurl_1.2-0 bitops_1.0-4.1
loaded via a namespace (and not attached):
[1] Biobase_2.5.6 Biostrings_2.13.39 BSgenome_1.13.11 IRanges_1.3.75
Rcompression_0.6-0 XML_2.6-0
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