[BioC] browserView does not work in 'rtracklayer' [failure to coerce "CompressedIntegerList"]
LiGang
luzifer.li at gmail.com
Tue Sep 22 09:11:13 CEST 2009
browserView does not work in 'rtracklayer' [failure to
coerce "CompressedIntegerList"]
library(rtracklayer)
browserSession("UCSC")->session
browserView(session, GenomicRanges(start=10000,end=100000,
chrom="1",genome="hg18"))
### Error in as.character.default(<S4 object of
class "CompressedIntegerList">) :
### no method for coercing this S4 class to a vector
#==================================
sessionInfo()
R version 2.10.0 Under development (unstable) (2009-09-14 r49685)
i386-pc-mingw32
locale:
[1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United
States.1252 LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C LC_TIME=English_United
States.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] rtracklayer_1.5.14 RCurl_1.2-0 bitops_1.0-4.1
loaded via a namespace (and not attached):
[1] Biobase_2.5.6 Biostrings_2.13.40 BSgenome_1.13.12
IRanges_1.3.77 Rcompression_0.6-0 XML_2.6-0
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